allensdk package¶
Subpackages¶
- allensdk.api package
- allensdk.brain_observatory package
- Subpackages
- allensdk.brain_observatory.behavior package
- allensdk.brain_observatory.data_release_utils package
- allensdk.brain_observatory.ecephys package
- allensdk.brain_observatory.extract_running_speed package
- allensdk.brain_observatory.gaze_mapping package
- allensdk.brain_observatory.multi_stimulus_running_speed package
- allensdk.brain_observatory.nwb package
- allensdk.brain_observatory.ophys package
- allensdk.brain_observatory.receptive_field_analysis package
- allensdk.brain_observatory.sync_utilities package
- allensdk.brain_observatory.vbn_2022 package
- allensdk.brain_observatory.visualization package
- Submodules
- allensdk.brain_observatory.argschema_utilities module
- allensdk.brain_observatory.brain_observatory_exceptions module
- allensdk.brain_observatory.brain_observatory_plotting module
- allensdk.brain_observatory.chisquare_categorical module
- allensdk.brain_observatory.circle_plots module
CoronaPlotter
FanPlotter
PolarPlotter
TrackPlotter
add_angle_labels()
add_arrow()
angle_lines()
build_hex_pack()
hex_pack()
make_pincushion_plot()
polar_line_circles()
polar_linspace()
polar_to_xy()
radial_arcs()
radial_circles()
reset_hex_pack()
rings_in_hex_pack()
spiral_trials()
spiral_trials_polar()
wedge_ring()
- allensdk.brain_observatory.comparison_utils module
- allensdk.brain_observatory.demixer module
- allensdk.brain_observatory.dff module
- allensdk.brain_observatory.drifting_gratings module
- allensdk.brain_observatory.findlevel module
- allensdk.brain_observatory.locally_sparse_noise module
- allensdk.brain_observatory.natural_movie module
- allensdk.brain_observatory.natural_scenes module
- allensdk.brain_observatory.observatory_plots module
DimensionPatchHandler
figure_in_px()
finalize_no_axes()
finalize_no_labels()
finalize_with_axes()
float_label()
plot_cell_correlation()
plot_combined_speed()
plot_condition_histogram()
plot_mask_outline()
plot_pupil_location()
plot_radial_histogram()
plot_receptive_field()
plot_representational_similarity()
plot_selectivity_cumulative_histogram()
plot_speed()
plot_time_to_peak()
population_correlation_scatter()
- allensdk.brain_observatory.r_neuropil module
- allensdk.brain_observatory.roi_masks module
- allensdk.brain_observatory.running_speed module
- allensdk.brain_observatory.session_analysis module
- allensdk.brain_observatory.session_api_utils module
- allensdk.brain_observatory.static_gratings module
- allensdk.brain_observatory.stimulus_analysis module
- allensdk.brain_observatory.stimulus_info module
BinaryIntervalSearchTree
BrainObservatoryMonitor
ExperimentGeometry
Monitor
StimulusSearch
all_stimuli()
get_spatial_grating()
get_spatio_temporal_grating()
lsn_coordinate_to_monitor_coordinate()
make_display_mask()
map_monitor_coordinate_to_stimulus_coordinate()
map_monitor_coordinate_to_template_coordinate()
map_stimulus()
map_stimulus_coordinate_to_monitor_coordinate()
map_template_coordinate_to_monitor_coordinate()
mask_stimulus_template()
monitor_coordinate_to_lsn_coordinate()
monitor_coordinate_to_natural_movie_coordinate()
natural_movie_coordinate_to_monitor_coordinate()
natural_scene_coordinate_to_monitor_coordinate()
rotate()
sessions_with_stimulus()
stimuli_in_session()
translate_image_and_fill()
warp_stimulus_coords()
- allensdk.brain_observatory.sync_dataset module
- allensdk.brain_observatory.sync_stim_aligner module
- Module contents
- Subpackages
- allensdk.config package
- allensdk.core package
- Subpackages
- Submodules
- allensdk.core.auth_config module
- allensdk.core.authentication module
- allensdk.core.brain_observatory_cache module
- allensdk.core.brain_observatory_nwb_data_set module
- allensdk.core.cache_method_utilities module
- allensdk.core.cell_types_cache module
- allensdk.core.dat_utilities module
- allensdk.core.dataframe_utils module
- allensdk.core.exceptions module
- allensdk.core.h5_utilities module
- allensdk.core.json_utilities module
- allensdk.core.mouse_connectivity_cache module
- allensdk.core.nwb_data_set module
- allensdk.core.obj_utilities module
- allensdk.core.ontology module
- allensdk.core.ophys_experiment_session_id_mapping module
- allensdk.core.pickle_utils module
- allensdk.core.reference_space module
- allensdk.core.reference_space_cache module
- allensdk.core.simple_tree module
- allensdk.core.sitk_utilities module
- allensdk.core.structure_tree module
- allensdk.core.swc module
- allensdk.core.typing module
- allensdk.core.utilities module
- Module contents
- allensdk.ephys package
- Submodules
- allensdk.ephys.ephys_extractor module
- allensdk.ephys.ephys_features module
FeatureError
adaptation_index()
analyze_trough_details()
average_rate()
average_voltage()
calculate_dvdt()
check_thresholds_and_peaks()
detect_bursts()
detect_pauses()
detect_putative_spikes()
estimate_adjusted_detection_parameters()
filter_putative_spikes()
find_downstroke_indexes()
find_peak_indexes()
find_time_index()
find_trough_indexes()
find_upstroke_indexes()
find_widths()
fit_membrane_time_constant()
fit_prespike_time_constant()
get_isis()
has_fixed_dt()
latency()
norm_diff()
norm_sq_diff()
refine_threshold_indexes()
- allensdk.ephys.extract_cell_features module
- allensdk.ephys.feature_extractor module
- Module contents
- Submodules
- allensdk.internal package
- Subpackages
- allensdk.internal.api package
- allensdk.internal.brain_observatory package
- allensdk.internal.core package
- allensdk.internal.ephys package
- allensdk.internal.model package
- allensdk.internal.morphology package
- allensdk.internal.mouse_connectivity package
- allensdk.internal.notebooks package
- allensdk.internal.pipeline_modules package
- Module contents
- Subpackages
- allensdk.model package
- allensdk.morphology package
- allensdk.mouse_connectivity package
- allensdk.test_utilities package