allensdk.mouse_connectivity.grid package¶
Subpackages¶
- allensdk.mouse_connectivity.grid.subimage package
- allensdk.mouse_connectivity.grid.utilities package
- Submodules
- allensdk.mouse_connectivity.grid.utilities.downsampling_utilities module
- allensdk.mouse_connectivity.grid.utilities.image_utilities module
block_apply()
build_affine_transform()
build_composite_transform()
compute_coarse_parameters()
grid_image_blocks()
image_from_array()
new_image()
np_sitk_convert()
rasterize_polygons()
read_intensity_image()
read_segmentation_image()
resample_into_volume()
resample_volume()
set_image_spacing()
sitk_np_convert()
write_volume()
- Module contents
- Submodules
- allensdk.mouse_connectivity.grid.writers package
Submodules¶
- allensdk.mouse_connectivity.grid.image_series_gridder module
ImageSeriesGridder
ImageSeriesGridder.accumulator_to_numpy()
ImageSeriesGridder.build_coarse_grids()
ImageSeriesGridder.consume_volume()
ImageSeriesGridder.initialize_coarse_volume()
ImageSeriesGridder.make_ratio_volume()
ImageSeriesGridder.paste_slice()
ImageSeriesGridder.paste_subimage()
ImageSeriesGridder.resample_volume()
ImageSeriesGridder.set_coarse_grid_parameters()
ImageSeriesGridder.setup_subimages()
ImageSeriesGridder.transform