allensdk.mouse_connectivity.grid package

Subpackages

• allensdk.mouse_connectivity.grid.subimage package
  • Submodules
    • allensdk.mouse_connectivity.grid.subimage.base_subimage module
      • IntensitySubImage
      • PolygonSubImage
      • SegmentationSubImage
      • SubImage
      • run_subimage()
    • allensdk.mouse_connectivity.grid.subimage.cav_subimage module
      • CavSubImage
    • allensdk.mouse_connectivity.grid.subimage.classic_subimage module
      • ClassicSubImage
    • allensdk.mouse_connectivity.grid.subimage.count_subimage module
      • CountSubImage
  • Module contents
    • run_subimage()
• allensdk.mouse_connectivity.grid.utilities package
  • Submodules
    • allensdk.mouse_connectivity.grid.utilities.downsampling_utilities module
      • apply_divisions()
      • block_average()
      • conv()
      • downsample_average()
      • extract()
      • window_average()
    • allensdk.mouse_connectivity.grid.utilities.image_utilities module
      • block_apply()
      • build_affine_transform()
      • build_composite_transform()
      • compute_coarse_parameters()
      • grid_image_blocks()
      • image_from_array()
      • new_image()
      • np_sitk_convert()
      • rasterize_polygons()
      • read_intensity_image()
      • read_segmentation_image()
      • resample_into_volume()
      • resample_volume()
      • set_image_spacing()
      • sitk_np_convert()
      • write_volume()
  • Module contents
• allensdk.mouse_connectivity.grid.writers package
  • Module contents
    • cav_writer()
    • classic_writer()
    • count_writer()
    • handle_pyramid()
    • ratio_and_pyramid()

Submodules

• allensdk.mouse_connectivity.grid.image_series_gridder module
  • ImageSeriesGridder
    • ImageSeriesGridder.accumulator_to_numpy()
    • ImageSeriesGridder.build_coarse_grids()
    • ImageSeriesGridder.consume_volume()
    • ImageSeriesGridder.initialize_coarse_volume()
    • ImageSeriesGridder.make_ratio_volume()
    • ImageSeriesGridder.paste_slice()
    • ImageSeriesGridder.paste_subimage()
    • ImageSeriesGridder.resample_volume()
    • ImageSeriesGridder.set_coarse_grid_parameters()
    • ImageSeriesGridder.setup_subimages()
    • ImageSeriesGridder.transform

Module contents