allensdk.mouse_connectivity.grid.utilities.image_utilities module
allensdk.mouse_connectivity.grid.utilities.image_utilities. block_apply ( in_image , out_shape , dtype , blocks , fn ) [source]
allensdk.mouse_connectivity.grid.utilities.image_utilities. build_affine_transform ( aff_params ) [source]
allensdk.mouse_connectivity.grid.utilities.image_utilities. build_composite_transform ( dfmfield = None , aff_params = None ) [source]
allensdk.mouse_connectivity.grid.utilities.image_utilities. compute_coarse_parameters ( in_dims , in_spacing , out_spacing , reduce_level ) [source]
allensdk.mouse_connectivity.grid.utilities.image_utilities. grid_image_blocks ( in_shape , in_spacing , out_spacing ) [source]
allensdk.mouse_connectivity.grid.utilities.image_utilities. image_from_array ( array , spacing , origin = True ) [source]
allensdk.mouse_connectivity.grid.utilities.image_utilities. new_image ( dims , spacing , dtype , origin = True ) [source]
allensdk.mouse_connectivity.grid.utilities.image_utilities. np_sitk_convert ( np_type ) [source]
allensdk.mouse_connectivity.grid.utilities.image_utilities. rasterize_polygons ( shape , scale , polys ) [source]
allensdk.mouse_connectivity.grid.utilities.image_utilities. read_intensity_image ( path )
allensdk.mouse_connectivity.grid.utilities.image_utilities. read_segmentation_image ( path )
allensdk.mouse_connectivity.grid.utilities.image_utilities. resample_into_volume ( image , transform , z , vol , dtype = 8 ) [source]
allensdk.mouse_connectivity.grid.utilities.image_utilities. resample_volume ( volume , dims , spacing , interpolator = None , transform = None ) [source]
allensdk.mouse_connectivity.grid.utilities.image_utilities. set_image_spacing ( image , spacing , origin = True ) [source]
allensdk.mouse_connectivity.grid.utilities.image_utilities. sitk_np_convert ( sitk_type ) [source]
allensdk.mouse_connectivity.grid.utilities.image_utilities. write_volume ( volume , name , prefix = None , specify_resolution = None , extension = '.nrrd' , paths = None ) [source]