Data Resources

The Allen SDK features Python code to support data and model access for the Allen Cell Types Database. Resources for other Allen Brain Atlas data resources will come in future updates.

• Brain Observatory
  • Data Processing
  • Getting Started
  • Precomputed Cell Metrics
• Cell Types
  • Examples
  • Cell Types Cache
  • Feature Extraction
  • File Formats
    • Morphology SWC Files
    • Neurodata Without Borders
    • HDF5 Overview
• Mouse Connectivity
  • Structure-Level Projection Data
  • Voxel-Level Projection Data
  • Code Examples
  • Mouse Connectivity Cache
  • File Formats
    • NRRD Files
• Reference Space
  • Structure Tree
  • Annotation Volumes
  • ReferenceSpaceCache Class
• API Access
  • RMA Database and Service API
  • Using Pandas to Process Query Results
  • Caching Queries on Disk
• Visual Coding – Neuropixels
  • Getting Started
  • Data Processing
  • Visual Stimulus Sets
  • AllenSDK 2.0 and Data Compatability
  • Quality Metrics
  • Precomputed Stimulus Metrics
• GETTING STARTED
  • Prerequisites
• TUTORIALS
• DOCUMENTATION
• VISUAL BEHAVIOR OPTICAL PHYSIOLOGY DATASETS
• BEHAVIORAL TRAINING
• 2-PHOTON IMAGING DURING BEHAVIOR
• SESSION STRUCTURE
• DATA PROCESSING
• QUALITY CONTROL
• SUMMARY OF AVAILABLE DATA
• DATA FILE CHANGELOG