allensdk.internal package¶
Subpackages¶
- allensdk.internal.api package
- allensdk.internal.brain_observatory package
- Subpackages
- Submodules
- allensdk.internal.brain_observatory.annotated_region_metrics module
- allensdk.internal.brain_observatory.demix_report module
- allensdk.internal.brain_observatory.demixer module
- allensdk.internal.brain_observatory.eye_calibration module
- allensdk.internal.brain_observatory.fit_ellipse module
- allensdk.internal.brain_observatory.frame_stream module
- allensdk.internal.brain_observatory.itracker module
- allensdk.internal.brain_observatory.itracker_utils module
- allensdk.internal.brain_observatory.mask_set module
- allensdk.internal.brain_observatory.mouse module
- allensdk.internal.brain_observatory.ophys_session_decomposition module
- allensdk.internal.brain_observatory.roi_filter module
- allensdk.internal.brain_observatory.roi_filter_utils module
- allensdk.internal.brain_observatory.run_itracker module
- allensdk.internal.brain_observatory.time_sync module
- Module contents
- allensdk.internal.core package
- allensdk.internal.ephys package
- Submodules
- allensdk.internal.ephys.core_feature_extract module
- allensdk.internal.ephys.plot_qc_figures module
exp_curve()
get_features()
get_spikes()
get_time_string()
load_experiment()
main()
make_cell_html()
make_cell_page()
make_sweep_html()
make_sweep_page()
mask_nulls()
plot_cell_figures()
plot_fi_curve_figures()
plot_hero_figures()
plot_images()
plot_instantaneous_threshold_thumbnail()
plot_long_square_summary()
plot_ramp_figures()
plot_rheo_figures()
plot_sag_figures()
plot_short_square_figures()
plot_single_ap_values()
plot_subthreshold_long_square_figures()
plot_sweep_figures()
plot_sweep_set_summary()
plot_sweep_value_figures()
save_figure()
- allensdk.internal.ephys.plot_qc_figures3 module
exp_curve()
get_features()
get_spikes()
get_time_string()
load_experiment()
make_cell_html()
make_cell_page()
make_sweep_html()
make_sweep_page()
mask_nulls()
plot_cell_figures()
plot_fi_curve_figures()
plot_hero_figures()
plot_images()
plot_instantaneous_threshold_thumbnail()
plot_long_square_summary()
plot_ramp_figures()
plot_rheo_figures()
plot_sag_figures()
plot_short_square_figures()
plot_single_ap_values()
plot_subthreshold_long_square_figures()
plot_sweep_figures()
plot_sweep_set_summary()
plot_sweep_value_figures()
save_figure()
- Module contents
- Submodules
- allensdk.internal.model package
- allensdk.internal.morphology package
- allensdk.internal.mouse_connectivity package
- allensdk.internal.notebooks package
- allensdk.internal.pipeline_modules package
- Subpackages
- Submodules
- allensdk.internal.pipeline_modules.run_annotated_region_metrics module
- allensdk.internal.pipeline_modules.run_demixing module
- allensdk.internal.pipeline_modules.run_dff_computation module
- allensdk.internal.pipeline_modules.run_eye_tracking module
- allensdk.internal.pipeline_modules.run_neuropil_correction module
- allensdk.internal.pipeline_modules.run_observatory_analysis module
- allensdk.internal.pipeline_modules.run_observatory_container_thumbnails module
- allensdk.internal.pipeline_modules.run_observatory_thumbnails module
build_cell_plots()
build_correlation_plots()
build_drifting_gratings()
build_experiment_thumbnails()
build_eye_tracking_plots()
build_locally_sparse_noise()
build_natural_movie()
build_natural_scenes()
build_plots()
build_receptive_field()
build_speed_tuning()
build_static_gratings()
build_type()
debug()
get_experiment_analysis_file()
get_experiment_files()
get_experiment_nwb_file()
get_input_data()
lsna_check_hvas()
main()
parse_input()
- allensdk.internal.pipeline_modules.run_ophys_eye_calibration module
- allensdk.internal.pipeline_modules.run_ophys_session_decomposition module
- allensdk.internal.pipeline_modules.run_ophys_time_sync module
- allensdk.internal.pipeline_modules.run_roi_filter module
- allensdk.internal.pipeline_modules.run_tissuecyte_projection_thumbnail_from_json module
- allensdk.internal.pipeline_modules.run_tissuecyte_stitching_classic module
- allensdk.internal.pipeline_modules.run_tissuecyte_unionize_cav_from_json module
- allensdk.internal.pipeline_modules.run_tissuecyte_unionize_classic_counts_from_json module
- allensdk.internal.pipeline_modules.run_tissuecyte_unionize_classic_from_json module
- Module contents