allensdk.internal package

Subpackages

• allensdk.internal.api package
  • Subpackages
    • allensdk.internal.api.queries package
      • Submodules
        • allensdk.internal.api.queries.behavior_lims_queries module
        • allensdk.internal.api.queries.biophysical_module_api module
        • allensdk.internal.api.queries.biophysical_module_reader module
        • allensdk.internal.api.queries.compound_lims_queries module
        • allensdk.internal.api.queries.ecephys_lims_queries module
        • allensdk.internal.api.queries.equipment_lims_queries module
        • allensdk.internal.api.queries.grid_data_api_prerelease module
        • allensdk.internal.api.queries.mouse_connectivity_api_prerelease module
        • allensdk.internal.api.queries.optimize_config_reader module
        • allensdk.internal.api.queries.pre_release module
        • allensdk.internal.api.queries.utils module
        • allensdk.internal.api.queries.wkf_lims_queries module
      • Module contents
  • Submodules
    • allensdk.internal.api.api_prerelease module
    • allensdk.internal.api.lims_api module
    • allensdk.internal.api.mtrain_api module
  • Module contents
• allensdk.internal.brain_observatory package
  • Subpackages
    • allensdk.internal.brain_observatory.resources package
      • Module contents
    • allensdk.internal.brain_observatory.util package
      • Submodules
        • allensdk.internal.brain_observatory.util.multi_session_utils module
      • Module contents
  • Submodules
    • allensdk.internal.brain_observatory.annotated_region_metrics module
    • allensdk.internal.brain_observatory.demix_report module
    • allensdk.internal.brain_observatory.demixer module
    • allensdk.internal.brain_observatory.eye_calibration module
    • allensdk.internal.brain_observatory.fit_ellipse module
    • allensdk.internal.brain_observatory.frame_stream module
    • allensdk.internal.brain_observatory.itracker module
    • allensdk.internal.brain_observatory.itracker_utils module
    • allensdk.internal.brain_observatory.mask_set module
    • allensdk.internal.brain_observatory.mouse module
    • allensdk.internal.brain_observatory.ophys_session_decomposition module
    • allensdk.internal.brain_observatory.roi_filter module
    • allensdk.internal.brain_observatory.roi_filter_utils module
    • allensdk.internal.brain_observatory.run_itracker module
    • allensdk.internal.brain_observatory.time_sync module
  • Module contents
• allensdk.internal.core package
  • Submodules
    • allensdk.internal.core.lims_pipeline_module module
    • allensdk.internal.core.lims_utilities module
    • allensdk.internal.core.mouse_connectivity_cache_prerelease module
    • allensdk.internal.core.simpletree module
    • allensdk.internal.core.swc module
  • Module contents
• allensdk.internal.ephys package
  • Submodules
    • allensdk.internal.ephys.core_feature_extract module
    • allensdk.internal.ephys.plot_qc_figures module
    • allensdk.internal.ephys.plot_qc_figures3 module
  • Module contents
• allensdk.internal.model package
  • Subpackages
    • allensdk.internal.model.biophysical package
      • Subpackages
        • allensdk.internal.model.biophysical.fits package
          • Subpackages
            • allensdk.internal.model.biophysical.fits.fit_styles package
              • Module contents
          • Module contents
        • allensdk.internal.model.biophysical.passive_fitting package
          • Subpackages
            • allensdk.internal.model.biophysical.passive_fitting.passive package
              • Module contents
          • Submodules
            • allensdk.internal.model.biophysical.passive_fitting.neuron_passive_fit module
            • allensdk.internal.model.biophysical.passive_fitting.neuron_passive_fit2 module
            • allensdk.internal.model.biophysical.passive_fitting.neuron_passive_fit_elec module
            • allensdk.internal.model.biophysical.passive_fitting.neuron_utils module
            • allensdk.internal.model.biophysical.passive_fitting.output_grabber module
            • allensdk.internal.model.biophysical.passive_fitting.preprocess module
          • Module contents
      • Submodules
        • allensdk.internal.model.biophysical.biophysical_archiver module
        • allensdk.internal.model.biophysical.check_fi_shift module
        • allensdk.internal.model.biophysical.deap_utils module
        • allensdk.internal.model.biophysical.ephys_utils module
        • allensdk.internal.model.biophysical.fit_stage_1 module
        • allensdk.internal.model.biophysical.fit_stage_2 module
        • allensdk.internal.model.biophysical.make_deap_fit_json module
        • allensdk.internal.model.biophysical.neuron_parallel module
        • allensdk.internal.model.biophysical.optimize module
        • allensdk.internal.model.biophysical.run_optimize module
        • allensdk.internal.model.biophysical.run_optimize_workflow module
        • allensdk.internal.model.biophysical.run_passive_fit module
        • allensdk.internal.model.biophysical.run_simulate_lims module
        • allensdk.internal.model.biophysical.run_simulate_workflow module
      • Module contents
    • allensdk.internal.model.glif package
      • Submodules
        • allensdk.internal.model.glif.ASGLM module
        • allensdk.internal.model.glif.MLIN module
        • allensdk.internal.model.glif.are_two_lists_of_arrays_the_same module
        • allensdk.internal.model.glif.configure_model module
        • allensdk.internal.model.glif.error_functions module
        • allensdk.internal.model.glif.find_spikes module
        • allensdk.internal.model.glif.find_sweeps module
        • allensdk.internal.model.glif.glif_experiment module
        • allensdk.internal.model.glif.glif_optimizer module
        • allensdk.internal.model.glif.glif_optimizer_neuron module
        • allensdk.internal.model.glif.optimize_neuron module
        • allensdk.internal.model.glif.plotting module
        • allensdk.internal.model.glif.preprocess_neuron module
        • allensdk.internal.model.glif.rc module
        • allensdk.internal.model.glif.spike_cutting module
        • allensdk.internal.model.glif.threshold_adaptation module
      • Module contents
  • Submodules
    • allensdk.internal.model.AIC module
    • allensdk.internal.model.GLM module
    • allensdk.internal.model.data_access module
  • Module contents
• allensdk.internal.morphology package
  • Submodules
    • allensdk.internal.morphology.compartment module
    • allensdk.internal.morphology.morphology module
    • allensdk.internal.morphology.morphvis module
    • allensdk.internal.morphology.node module
    • allensdk.internal.morphology.validate_swc module
  • Module contents
• allensdk.internal.mouse_connectivity package
  • Subpackages
    • allensdk.internal.mouse_connectivity.interval_unionize package
      • Submodules
        • allensdk.internal.mouse_connectivity.interval_unionize.cav_unionize module
        • allensdk.internal.mouse_connectivity.interval_unionize.cav_unionizer module
        • allensdk.internal.mouse_connectivity.interval_unionize.data_utilities module
        • allensdk.internal.mouse_connectivity.interval_unionize.interval_unionizer module
        • allensdk.internal.mouse_connectivity.interval_unionize.run_tissuecyte_unionize_cav module
        • allensdk.internal.mouse_connectivity.interval_unionize.run_tissuecyte_unionize_classic module
        • allensdk.internal.mouse_connectivity.interval_unionize.tissuecyte_unionize_record module
        • allensdk.internal.mouse_connectivity.interval_unionize.tissuecyte_unionizer module
        • allensdk.internal.mouse_connectivity.interval_unionize.unionize_record module
      • Module contents
    • allensdk.internal.mouse_connectivity.projection_thumbnail package
      • Submodules
        • allensdk.internal.mouse_connectivity.projection_thumbnail.generate_projection_strip module
        • allensdk.internal.mouse_connectivity.projection_thumbnail.image_sheet module
        • allensdk.internal.mouse_connectivity.projection_thumbnail.projection_functions module
        • allensdk.internal.mouse_connectivity.projection_thumbnail.visualization_utilities module
        • allensdk.internal.mouse_connectivity.projection_thumbnail.volume_projector module
        • allensdk.internal.mouse_connectivity.projection_thumbnail.volume_utilities module
      • Module contents
    • allensdk.internal.mouse_connectivity.tissuecyte_stitching package
      • Submodules
        • allensdk.internal.mouse_connectivity.tissuecyte_stitching.stitcher module
        • allensdk.internal.mouse_connectivity.tissuecyte_stitching.tile module
      • Module contents
  • Module contents
• allensdk.internal.notebooks package
  • Submodules
    • allensdk.internal.notebooks.execute_notebooks module
  • Module contents
• allensdk.internal.pipeline_modules package
  • Subpackages
    • allensdk.internal.pipeline_modules.gbm package
      • Submodules
        • allensdk.internal.pipeline_modules.gbm.generate_gbm_analysis_run_records module
        • allensdk.internal.pipeline_modules.gbm.generate_gbm_heatmap module
        • allensdk.internal.pipeline_modules.gbm.generate_gbm_sample_metadata module
      • Module contents
  • Submodules
    • allensdk.internal.pipeline_modules.run_annotated_region_metrics module
    • allensdk.internal.pipeline_modules.run_demixing module
    • allensdk.internal.pipeline_modules.run_dff_computation module
    • allensdk.internal.pipeline_modules.run_eye_tracking module
    • allensdk.internal.pipeline_modules.run_neuropil_correction module
    • allensdk.internal.pipeline_modules.run_observatory_analysis module
    • allensdk.internal.pipeline_modules.run_observatory_container_thumbnails module
    • allensdk.internal.pipeline_modules.run_observatory_thumbnails module
    • allensdk.internal.pipeline_modules.run_ophys_eye_calibration module
    • allensdk.internal.pipeline_modules.run_ophys_session_decomposition module
    • allensdk.internal.pipeline_modules.run_ophys_time_sync module
    • allensdk.internal.pipeline_modules.run_roi_filter module
    • allensdk.internal.pipeline_modules.run_tissuecyte_projection_thumbnail_from_json module
    • allensdk.internal.pipeline_modules.run_tissuecyte_stitching_classic module
    • allensdk.internal.pipeline_modules.run_tissuecyte_unionize_cav_from_json module
    • allensdk.internal.pipeline_modules.run_tissuecyte_unionize_classic_counts_from_json module
    • allensdk.internal.pipeline_modules.run_tissuecyte_unionize_classic_from_json module
  • Module contents

Module contents