allensdk.internal package¶
Subpackages¶
- allensdk.internal.api package
- Subpackages
- allensdk.internal.api.queries package
- Submodules
- allensdk.internal.api.queries.behavior_lims_queries module
- allensdk.internal.api.queries.biophysical_module_api module
- allensdk.internal.api.queries.biophysical_module_reader module
- allensdk.internal.api.queries.compound_lims_queries module
- allensdk.internal.api.queries.ecephys_lims_queries module
- allensdk.internal.api.queries.equipment_lims_queries module
- allensdk.internal.api.queries.grid_data_api_prerelease module
- allensdk.internal.api.queries.mouse_connectivity_api_prerelease module
- allensdk.internal.api.queries.optimize_config_reader module
- allensdk.internal.api.queries.pre_release module
- allensdk.internal.api.queries.utils module
- allensdk.internal.api.queries.wkf_lims_queries module
- Module contents
- Submodules
- allensdk.internal.api.queries package
- Submodules
- Module contents
- Subpackages
- allensdk.internal.brain_observatory package
- Subpackages
- Submodules
- allensdk.internal.brain_observatory.annotated_region_metrics module
- allensdk.internal.brain_observatory.demix_report module
- allensdk.internal.brain_observatory.demixer module
- allensdk.internal.brain_observatory.eye_calibration module
- allensdk.internal.brain_observatory.fit_ellipse module
- allensdk.internal.brain_observatory.frame_stream module
- allensdk.internal.brain_observatory.itracker module
- allensdk.internal.brain_observatory.itracker_utils module
- allensdk.internal.brain_observatory.mask_set module
- allensdk.internal.brain_observatory.mouse module
- allensdk.internal.brain_observatory.ophys_session_decomposition module
- allensdk.internal.brain_observatory.roi_filter module
- allensdk.internal.brain_observatory.roi_filter_utils module
- allensdk.internal.brain_observatory.run_itracker module
- allensdk.internal.brain_observatory.time_sync module
- Module contents
- allensdk.internal.core package
- allensdk.internal.ephys package
- allensdk.internal.model package
- Subpackages
- allensdk.internal.model.biophysical package
- Subpackages
- allensdk.internal.model.biophysical.fits package
- allensdk.internal.model.biophysical.passive_fitting package
- Subpackages
- Submodules
- allensdk.internal.model.biophysical.passive_fitting.neuron_passive_fit module
- allensdk.internal.model.biophysical.passive_fitting.neuron_passive_fit2 module
- allensdk.internal.model.biophysical.passive_fitting.neuron_passive_fit_elec module
- allensdk.internal.model.biophysical.passive_fitting.neuron_utils module
- allensdk.internal.model.biophysical.passive_fitting.output_grabber module
- allensdk.internal.model.biophysical.passive_fitting.preprocess module
- Module contents
- Submodules
- allensdk.internal.model.biophysical.biophysical_archiver module
- allensdk.internal.model.biophysical.check_fi_shift module
- allensdk.internal.model.biophysical.deap_utils module
- allensdk.internal.model.biophysical.ephys_utils module
- allensdk.internal.model.biophysical.fit_stage_1 module
- allensdk.internal.model.biophysical.fit_stage_2 module
- allensdk.internal.model.biophysical.make_deap_fit_json module
- allensdk.internal.model.biophysical.neuron_parallel module
- allensdk.internal.model.biophysical.optimize module
- allensdk.internal.model.biophysical.run_optimize module
- allensdk.internal.model.biophysical.run_optimize_workflow module
- allensdk.internal.model.biophysical.run_passive_fit module
- allensdk.internal.model.biophysical.run_simulate_lims module
- allensdk.internal.model.biophysical.run_simulate_workflow module
- Module contents
- Subpackages
- allensdk.internal.model.glif package
- Submodules
- allensdk.internal.model.glif.ASGLM module
- allensdk.internal.model.glif.MLIN module
- allensdk.internal.model.glif.are_two_lists_of_arrays_the_same module
- allensdk.internal.model.glif.configure_model module
- allensdk.internal.model.glif.error_functions module
- allensdk.internal.model.glif.find_spikes module
- allensdk.internal.model.glif.find_sweeps module
- allensdk.internal.model.glif.glif_experiment module
- allensdk.internal.model.glif.glif_optimizer module
- allensdk.internal.model.glif.glif_optimizer_neuron module
- allensdk.internal.model.glif.optimize_neuron module
- allensdk.internal.model.glif.plotting module
- allensdk.internal.model.glif.preprocess_neuron module
- allensdk.internal.model.glif.rc module
- allensdk.internal.model.glif.spike_cutting module
- allensdk.internal.model.glif.threshold_adaptation module
- Module contents
- Submodules
- allensdk.internal.model.biophysical package
- Submodules
- Module contents
- Subpackages
- allensdk.internal.morphology package
- allensdk.internal.mouse_connectivity package
- Subpackages
- allensdk.internal.mouse_connectivity.interval_unionize package
- Submodules
- allensdk.internal.mouse_connectivity.interval_unionize.cav_unionize module
- allensdk.internal.mouse_connectivity.interval_unionize.cav_unionizer module
- allensdk.internal.mouse_connectivity.interval_unionize.data_utilities module
- allensdk.internal.mouse_connectivity.interval_unionize.interval_unionizer module
- allensdk.internal.mouse_connectivity.interval_unionize.run_tissuecyte_unionize_cav module
- allensdk.internal.mouse_connectivity.interval_unionize.run_tissuecyte_unionize_classic module
- allensdk.internal.mouse_connectivity.interval_unionize.tissuecyte_unionize_record module
- allensdk.internal.mouse_connectivity.interval_unionize.tissuecyte_unionizer module
- allensdk.internal.mouse_connectivity.interval_unionize.unionize_record module
- Module contents
- Submodules
- allensdk.internal.mouse_connectivity.projection_thumbnail package
- Submodules
- allensdk.internal.mouse_connectivity.projection_thumbnail.generate_projection_strip module
- allensdk.internal.mouse_connectivity.projection_thumbnail.image_sheet module
- allensdk.internal.mouse_connectivity.projection_thumbnail.projection_functions module
- allensdk.internal.mouse_connectivity.projection_thumbnail.visualization_utilities module
- allensdk.internal.mouse_connectivity.projection_thumbnail.volume_projector module
- allensdk.internal.mouse_connectivity.projection_thumbnail.volume_utilities module
- Module contents
- Submodules
- allensdk.internal.mouse_connectivity.tissuecyte_stitching package
- allensdk.internal.mouse_connectivity.interval_unionize package
- Module contents
- Subpackages
- allensdk.internal.notebooks package
- allensdk.internal.pipeline_modules package
- Subpackages
- Submodules
- allensdk.internal.pipeline_modules.run_annotated_region_metrics module
- allensdk.internal.pipeline_modules.run_demixing module
- allensdk.internal.pipeline_modules.run_dff_computation module
- allensdk.internal.pipeline_modules.run_eye_tracking module
- allensdk.internal.pipeline_modules.run_neuropil_correction module
- allensdk.internal.pipeline_modules.run_observatory_analysis module
- allensdk.internal.pipeline_modules.run_observatory_container_thumbnails module
- allensdk.internal.pipeline_modules.run_observatory_thumbnails module
- allensdk.internal.pipeline_modules.run_ophys_eye_calibration module
- allensdk.internal.pipeline_modules.run_ophys_session_decomposition module
- allensdk.internal.pipeline_modules.run_ophys_time_sync module
- allensdk.internal.pipeline_modules.run_roi_filter module
- allensdk.internal.pipeline_modules.run_tissuecyte_projection_thumbnail_from_json module
- allensdk.internal.pipeline_modules.run_tissuecyte_stitching_classic module
- allensdk.internal.pipeline_modules.run_tissuecyte_unionize_cav_from_json module
- allensdk.internal.pipeline_modules.run_tissuecyte_unionize_classic_counts_from_json module
- allensdk.internal.pipeline_modules.run_tissuecyte_unionize_classic_from_json module
- Module contents