allensdk.internal.brain_observatory.demix_report module

allensdk.internal.brain_observatory.demix_report.background_trace(trace, save_dir, data_set=None)[source]
allensdk.internal.brain_observatory.demix_report.compute_correlations(dm, movie_path, movie_dataset)[source]
allensdk.internal.brain_observatory.demix_report.compute_correlations_without_masks(dm)[source]
allensdk.internal.brain_observatory.demix_report.compute_non_overlap_masks(dm)[source]
allensdk.internal.brain_observatory.demix_report.compute_non_overlap_traces(dm, movie_path, movie_dataset)[source]
allensdk.internal.brain_observatory.demix_report.correlation_report(dm, save_dir, without_masks=True)[source]
parameters:

dm: [DeMix object] without_masks: boolean

allensdk.internal.brain_observatory.demix_report.plot_masks(dm, save_dir, movie_file, movie_dataset, window=150, add_background=True)[source]