allensdk.ephys package

Submodules

• allensdk.ephys.ephys_extractor module
  • EphysCellFeatureExtractor
    • EphysCellFeatureExtractor.SAG_TARGET
    • EphysCellFeatureExtractor.SUBTHRESH_MAX_AMP
    • EphysCellFeatureExtractor.as_dict()
    • EphysCellFeatureExtractor.cell_features()
    • EphysCellFeatureExtractor.long_squares_features()
    • EphysCellFeatureExtractor.long_squares_stim_amps()
    • EphysCellFeatureExtractor.process()
    • EphysCellFeatureExtractor.ramps_features()
    • EphysCellFeatureExtractor.short_squares_features()
  • EphysSweepFeatureExtractor
    • EphysSweepFeatureExtractor.as_dict()
    • EphysSweepFeatureExtractor.burst_metrics()
    • EphysSweepFeatureExtractor.delay_metrics()
    • EphysSweepFeatureExtractor.estimate_sag()
    • EphysSweepFeatureExtractor.estimate_time_constant()
    • EphysSweepFeatureExtractor.is_spike_feature_affected_by_clipping()
    • EphysSweepFeatureExtractor.pause_metrics()
    • EphysSweepFeatureExtractor.process_new_spike_feature()
    • EphysSweepFeatureExtractor.process_new_sweep_feature()
    • EphysSweepFeatureExtractor.process_spikes()
    • EphysSweepFeatureExtractor.set_stimulus_amplitude_calculator()
    • EphysSweepFeatureExtractor.spike_feature()
    • EphysSweepFeatureExtractor.spike_feature_keys()
    • EphysSweepFeatureExtractor.spikes()
    • EphysSweepFeatureExtractor.stimulus_amplitude()
    • EphysSweepFeatureExtractor.sweep_feature()
    • EphysSweepFeatureExtractor.sweep_feature_keys()
    • EphysSweepFeatureExtractor.voltage_deflection()
  • EphysSweepSetFeatureExtractor
    • EphysSweepSetFeatureExtractor.from_sweeps()
    • EphysSweepSetFeatureExtractor.process_spikes()
    • EphysSweepSetFeatureExtractor.spike_feature_averages()
    • EphysSweepSetFeatureExtractor.sweep_features()
    • EphysSweepSetFeatureExtractor.sweeps()
  • cell_extractor_for_nwb()
  • extractor_for_nwb_sweeps()
  • fit_fi_slope()
  • input_resistance()
  • membrane_time_constant()
  • reset_long_squares_start()
• allensdk.ephys.ephys_features module
  • FeatureError
  • adaptation_index()
  • analyze_trough_details()
  • average_rate()
  • average_voltage()
  • calculate_dvdt()
  • check_thresholds_and_peaks()
  • detect_bursts()
  • detect_pauses()
  • detect_putative_spikes()
  • estimate_adjusted_detection_parameters()
  • filter_putative_spikes()
  • find_downstroke_indexes()
  • find_peak_indexes()
  • find_time_index()
  • find_trough_indexes()
  • find_upstroke_indexes()
  • find_widths()
  • fit_membrane_time_constant()
  • fit_prespike_time_constant()
  • get_isis()
  • has_fixed_dt()
  • latency()
  • norm_diff()
  • norm_sq_diff()
  • refine_threshold_indexes()
• allensdk.ephys.extract_cell_features module
  • extract_cell_features()
  • extract_sweep_features()
  • get_ramp_stim_characteristics()
  • get_square_stim_characteristics()
  • get_stim_characteristics()
  • mean_features_spike_zero()
• allensdk.ephys.feature_extractor module
  • EphysFeatureExtractor
    • EphysFeatureExtractor.adaptation_index()
    • EphysFeatureExtractor.calculate_trough()
    • EphysFeatureExtractor.isicv()
    • EphysFeatureExtractor.process_instance()
    • EphysFeatureExtractor.push_summary()
    • EphysFeatureExtractor.score_feature_set()
    • EphysFeatureExtractor.summarize()
  • EphysFeatures
    • EphysFeatures.clone()
    • EphysFeatures.print_out()

Module contents