allensdk.internal.model.glif package

Submodules

• allensdk.internal.model.glif.ASGLM module
  • ASGLM_pairwise()
• allensdk.internal.model.glif.MLIN module
  • MLIN()
  • autocorr()
  • exp_decay()
  • expsymm_cdf()
  • expsymm_pdf()
  • find_bin_center()
• allensdk.internal.model.glif.are_two_lists_of_arrays_the_same module
  • are_two_lists_of_arrays_the_same()
• allensdk.internal.model.glif.configure_model module
• allensdk.internal.model.glif.error_functions module
  • MLIN_list_error()
• allensdk.internal.model.glif.find_spikes module
  • align_and_cut_spikes()
  • find_spikes_list()
  • find_spikes_list_old()
  • find_spikes_old()
  • find_spikes_ssq_list()
• allensdk.internal.model.glif.find_sweeps module
  • MissingSweepException
  • find_long_square_sweeps()
  • find_noise_sweeps()
  • find_ramp_sweeps()
  • find_ramp_to_rheo_sweeps()
  • find_ranked_sweep()
  • find_short_square_sweeps()
  • find_sweeps()
  • get_sweep_numbers()
  • get_sweeps_by_name()
  • main()
  • organize_sweeps_by_name()
  • parse_arguments()
• allensdk.internal.model.glif.glif_experiment module
  • GlifExperiment
    • GlifExperiment.neuron_parameter_count()
    • GlifExperiment.run()
    • GlifExperiment.run_base_model()
    • GlifExperiment.set_neuron_parameters()
• allensdk.internal.model.glif.glif_optimizer module
  • GlifOptimizer
    • GlifOptimizer.evaluate()
    • GlifOptimizer.initiate_unique_seed()
    • GlifOptimizer.randomize_parameter_values()
    • GlifOptimizer.run_many()
    • GlifOptimizer.run_once()
    • GlifOptimizer.run_once_bound()
    • GlifOptimizer.to_dict()
• allensdk.internal.model.glif.glif_optimizer_neuron module
  • GlifBadInitializationException
  • GlifNeuronException
  • GlifOptimizerNeuron
    • GlifOptimizerNeuron.TYPE
    • GlifOptimizerNeuron.from_dict()
    • GlifOptimizerNeuron.from_dict_legacy()
    • GlifOptimizerNeuron.run_until_biological_spike()
    • GlifOptimizerNeuron.run_with_biological_spikes()
    • GlifOptimizerNeuron.to_dict()
  • extrapolate_model_spike_from_endpoints()
  • extrapolate_model_spike_from_endpoints_single_tau()
  • extrapolate_spike_time()
  • extrapolate_spike_voltage()
  • find_first_model_spike()
  • interpolate_spike_voltage()
• allensdk.internal.model.glif.optimize_neuron module
  • get_optimize_sweep_numbers()
  • main()
  • optimize_neuron()
• allensdk.internal.model.glif.plotting module
  • checkPreprocess()
  • checkSpikeCutting()
  • plotLineRegress1()
  • plotLineRegressRed()
  • plotSpikes()
• allensdk.internal.model.glif.preprocess_neuron module
  • MissingSpikeException
  • estimate_dv_cutoff()
  • find_first_spike_voltage()
  • main()
  • preprocess_neuron()
  • tag_plot()
• allensdk.internal.model.glif.rc module
  • least_squares_RCEl_calc_tested()
• allensdk.internal.model.glif.spike_cutting module
  • calc_spike_cut_and_v_reset_via_expvar_residuals()
  • plotLineRegress1()
  • plotLineRegressRed()
• allensdk.internal.model.glif.threshold_adaptation module
  • calc_spike_component_of_threshold_from_multiblip()
  • exp_fit_c()
  • exp_force_c()
  • fit_avoltage_bvoltage()
  • fit_avoltage_bvoltage_th()
  • get_peaks()

Module contents