allensdk.mouse_connectivity.grid.subimage.count_subimage module

class allensdk.mouse_connectivity.grid.subimage.count_subimage.CountSubImage(reduce_level, in_dims, in_spacing, coarse_spacing, polygon_info, segmentation_paths, injection_polygon_key='aav_tracer', *args, **kwargs)

Bases: SegmentationSubImage, PolygonSubImage

compute_coarse_planes()

compute_injection()

compute_projection()

compute_sum_pixels()

process_segmentation()

required_polys = ['missing_tile', 'no_signal', 'aav_exclusion']

required_segmentations = ['segmentation']