allensdk.mouse_connectivity.grid.subimage package

Submodules

• allensdk.mouse_connectivity.grid.subimage.base_subimage module
  • IntensitySubImage
    • IntensitySubImage.get_intensity()
    • IntensitySubImage.required_intensities
    • IntensitySubImage.setup_images()
  • PolygonSubImage
    • PolygonSubImage.get_polygons()
    • PolygonSubImage.optional_polys
    • PolygonSubImage.required_polys
    • PolygonSubImage.setup_images()
  • SegmentationSubImage
    • SegmentationSubImage.extract_injection_from_segmentation()
    • SegmentationSubImage.extract_signal_from_segmentation()
    • SegmentationSubImage.get_segmentation()
    • SegmentationSubImage.process_segmentation()
    • SegmentationSubImage.read_segmentation_image()
    • SegmentationSubImage.required_segmentations
    • SegmentationSubImage.setup_images()
  • SubImage
    • SubImage.apply_mask()
    • SubImage.apply_pixel_counter()
    • SubImage.binarize()
    • SubImage.compute_coarse_planes()
    • SubImage.make_pixel_counter()
    • SubImage.pixel_counter
    • SubImage.setup_images()
  • run_subimage()
• allensdk.mouse_connectivity.grid.subimage.cav_subimage module
  • CavSubImage
    • CavSubImage.compute_coarse_planes()
    • CavSubImage.required_polys
• allensdk.mouse_connectivity.grid.subimage.classic_subimage module
  • ClassicSubImage
    • ClassicSubImage.compute_coarse_planes()
    • ClassicSubImage.compute_injection()
    • ClassicSubImage.compute_intensity()
    • ClassicSubImage.compute_projection()
    • ClassicSubImage.compute_sum_pixels()
    • ClassicSubImage.optional_polys
    • ClassicSubImage.process_segmentation()
    • ClassicSubImage.required_intensities
    • ClassicSubImage.required_polys
    • ClassicSubImage.required_segmentations
• allensdk.mouse_connectivity.grid.subimage.count_subimage module
  • CountSubImage
    • CountSubImage.compute_coarse_planes()
    • CountSubImage.compute_injection()
    • CountSubImage.compute_projection()
    • CountSubImage.compute_sum_pixels()
    • CountSubImage.process_segmentation()
    • CountSubImage.required_polys
    • CountSubImage.required_segmentations

Module contents

allensdk.mouse_connectivity.grid.subimage.run_subimage(input_data)