allensdk.brain_observatory.behavior package

Subpackages

• allensdk.brain_observatory.behavior.behavior_project_cache package
  • Subpackages
    • allensdk.brain_observatory.behavior.behavior_project_cache.project_metadata_writer package
      • Submodules
      • Module contents
    • allensdk.brain_observatory.behavior.behavior_project_cache.tables package
      • Subpackages
      • Submodules
      • Module contents
  • Submodules
    • allensdk.brain_observatory.behavior.behavior_project_cache.behavior_neuropixels_project_cache module
    • allensdk.brain_observatory.behavior.behavior_project_cache.behavior_project_cache module
    • allensdk.brain_observatory.behavior.behavior_project_cache.project_cache_base module
    • allensdk.brain_observatory.behavior.behavior_project_cache.utils module
  • Module contents
• allensdk.brain_observatory.behavior.data_files package
  • Submodules
    • allensdk.brain_observatory.behavior.data_files.avg_projection_file module
    • allensdk.brain_observatory.behavior.data_files.demix_file module
    • allensdk.brain_observatory.behavior.data_files.dff_file module
    • allensdk.brain_observatory.behavior.data_files.event_detection_file module
    • allensdk.brain_observatory.behavior.data_files.eye_tracking_file module
    • allensdk.brain_observatory.behavior.data_files.eye_tracking_metadata_file module
    • allensdk.brain_observatory.behavior.data_files.eye_tracking_video module
    • allensdk.brain_observatory.behavior.data_files.max_projection_file module
    • allensdk.brain_observatory.behavior.data_files.neuropil_corrected_file module
    • allensdk.brain_observatory.behavior.data_files.neuropil_file module
    • allensdk.brain_observatory.behavior.data_files.rigid_motion_transform_file module
    • allensdk.brain_observatory.behavior.data_files.stimulus_file module
    • allensdk.brain_observatory.behavior.data_files.sync_file module
  • Module contents
• allensdk.brain_observatory.behavior.data_objects package
  • Subpackages
    • allensdk.brain_observatory.behavior.data_objects.cell_specimens package
      • Subpackages
      • Submodules
      • Module contents
    • allensdk.brain_observatory.behavior.data_objects.eye_tracking package
      • Submodules
      • Module contents
    • allensdk.brain_observatory.behavior.data_objects.metadata package
      • Subpackages
      • Submodules
      • Module contents
    • allensdk.brain_observatory.behavior.data_objects.running_speed package
      • Submodules
      • Module contents
    • allensdk.brain_observatory.behavior.data_objects.stimuli package
      • Submodules
      • Module contents
    • allensdk.brain_observatory.behavior.data_objects.timestamps package
      • Subpackages
      • Submodules
      • Module contents
    • allensdk.brain_observatory.behavior.data_objects.trials package
      • Submodules
      • Module contents
  • Submodules
    • allensdk.brain_observatory.behavior.data_objects.licks module
    • allensdk.brain_observatory.behavior.data_objects.motion_correction module
    • allensdk.brain_observatory.behavior.data_objects.projections module
    • allensdk.brain_observatory.behavior.data_objects.rewards module
    • allensdk.brain_observatory.behavior.data_objects.task_parameters module
  • Module contents
• allensdk.brain_observatory.behavior.sync package
  • Submodules
    • allensdk.brain_observatory.behavior.sync.process_sync module
      • calculate_delay()
      • filter_digital()
  • Module contents
    • get_behavior_monitoring()
    • get_eye_tracking()
    • get_lick_times()
    • get_ophys_frames()
    • get_raw_stimulus_frames()
    • get_stim_photodiode()
    • get_sync_data()
    • get_trigger()
• allensdk.brain_observatory.behavior.utils package
  • Submodules
    • allensdk.brain_observatory.behavior.utils.metadata_parsers module
      • parse_behavior_context()
      • parse_num_cortical_structures()
      • parse_num_depths()
      • parse_stimulus_set()
  • Module contents
• allensdk.brain_observatory.behavior.write_nwb package
  • Subpackages
    • allensdk.brain_observatory.behavior.write_nwb.behavior package
      • Submodules
      • Module contents
    • allensdk.brain_observatory.behavior.write_nwb.extensions package
      • Subpackages
      • Module contents
    • allensdk.brain_observatory.behavior.write_nwb.ophys package
      • Submodules
      • Module contents
  • Submodules
    • allensdk.brain_observatory.behavior.write_nwb.nwb_writer_utils module
  • Module contents

Submodules

• allensdk.brain_observatory.behavior.behavior_ophys_analysis module
• allensdk.brain_observatory.behavior.behavior_ophys_experiment module
• allensdk.brain_observatory.behavior.behavior_ophys_session module
• allensdk.brain_observatory.behavior.behavior_session module
• allensdk.brain_observatory.behavior.criteria module
  • consistency_is_key()
  • consistent_behavior_within_session()
  • meets_engagement_criteria()
  • mostly_useful()
  • n_complete()
  • no_response_bias()
  • summer_over()
  • two_out_of_three_aint_bad()
  • whole_lotta_trials()
  • yesterday_was_good()
• allensdk.brain_observatory.behavior.dprime module
  • get_catch_responses()
  • get_dprime()
  • get_false_alarm_rate()
  • get_go_responses()
  • get_hit_rate()
  • get_rolling_dprime()
  • get_trial_count_corrected_false_alarm_rate()
  • get_trial_count_corrected_hit_rate()
  • trial_number_limit()
• allensdk.brain_observatory.behavior.event_detection module
  • filter_events_array()
• allensdk.brain_observatory.behavior.eye_tracking_processing module
  • EyeTrackingError
  • compute_circular_area()
  • compute_elliptical_area()
  • determine_likely_blinks()
  • determine_outliers()
  • filter_on_blinks()
  • load_eye_tracking_hdf()
  • process_eye_tracking_data()
• allensdk.brain_observatory.behavior.image_api module
  • Image
    • Image.data
    • Image.spacing
    • Image.unit
  • ImageApi
    • ImageApi.deserialize()
    • ImageApi.serialize()
• allensdk.brain_observatory.behavior.mtrain module
  • ExtendedTrialSchema
    • ExtendedTrialSchema.opts
  • FriendlyDate
  • FriendlyDateTime
  • annotate_change_detect()
  • annotate_trials()
  • assign_session_id()
  • explode_response_window()
  • fix_change_time()
• allensdk.brain_observatory.behavior.rewards_processing module
  • get_rewards()
• allensdk.brain_observatory.behavior.schemas module
  • BehaviorMetadataSchema
    • BehaviorMetadataSchema.neurodata_doc
    • BehaviorMetadataSchema.neurodata_skip
    • BehaviorMetadataSchema.neurodata_type
    • BehaviorMetadataSchema.neurodata_type_inc
    • BehaviorMetadataSchema.opts
  • BehaviorTaskParametersSchema
    • BehaviorTaskParametersSchema.neurodata_doc
    • BehaviorTaskParametersSchema.neurodata_type
    • BehaviorTaskParametersSchema.neurodata_type_inc
    • BehaviorTaskParametersSchema.opts
  • CompleteOphysBehaviorMetadataSchema
    • CompleteOphysBehaviorMetadataSchema.dump_fields
    • CompleteOphysBehaviorMetadataSchema.exclude
    • CompleteOphysBehaviorMetadataSchema.fields
    • CompleteOphysBehaviorMetadataSchema.load_fields
    • CompleteOphysBehaviorMetadataSchema.opts
  • EyeTrackingRigGeometry
    • EyeTrackingRigGeometry.opts
  • NwbOphysMetadataSchema
    • NwbOphysMetadataSchema.opts
  • OphysBehaviorMetadataSchema
    • OphysBehaviorMetadataSchema.dump_fields
    • OphysBehaviorMetadataSchema.exclude
    • OphysBehaviorMetadataSchema.fields
    • OphysBehaviorMetadataSchema.load_fields
    • OphysBehaviorMetadataSchema.neurodata_doc
    • OphysBehaviorMetadataSchema.neurodata_skip
    • OphysBehaviorMetadataSchema.neurodata_type
    • OphysBehaviorMetadataSchema.neurodata_type_inc
    • OphysBehaviorMetadataSchema.opts
  • OphysEyeTrackingRigMetadataSchema
    • OphysEyeTrackingRigMetadataSchema.neurodata_doc
    • OphysEyeTrackingRigMetadataSchema.neurodata_type
    • OphysEyeTrackingRigMetadataSchema.neurodata_type_inc
    • OphysEyeTrackingRigMetadataSchema.opts
  • OphysMetadataSchema
    • OphysMetadataSchema.dump_fields
    • OphysMetadataSchema.exclude
    • OphysMetadataSchema.fields
    • OphysMetadataSchema.load_fields
    • OphysMetadataSchema.opts
  • RaisingSchema
    • RaisingSchema.Meta
      • RaisingSchema.Meta.unknown
    • RaisingSchema.opts
  • SubjectMetadataSchema
    • SubjectMetadataSchema.dump_fields
    • SubjectMetadataSchema.exclude
    • SubjectMetadataSchema.fields
    • SubjectMetadataSchema.load_fields
    • SubjectMetadataSchema.neurodata_doc
    • SubjectMetadataSchema.neurodata_skip
    • SubjectMetadataSchema.neurodata_type
    • SubjectMetadataSchema.neurodata_type_inc
    • SubjectMetadataSchema.opts
• allensdk.brain_observatory.behavior.session_metrics module
  • num_contingent_trials()
  • response_bias()
• allensdk.brain_observatory.behavior.stimulus_processing module
• allensdk.brain_observatory.behavior.trial_masks module
  • contingent_trials()
  • reward_rate()
  • trial_types()
• allensdk.brain_observatory.behavior.trials_processing module

Module contents