allensdk.brain_observatory.observatory_plots module

class allensdk.brain_observatory.observatory_plots.DimensionPatchHandler(vals, start_color, end_color, *args, **kwargs)[source]

Bases: object

dim_color(self, index)[source]
legend_artist(self, legend, orig_handle, fontsize, handlebox)[source]
allensdk.brain_observatory.observatory_plots.figure_in_px(w, h, file_name, dpi=96.0, transparent=False)[source]
allensdk.brain_observatory.observatory_plots.finalize_no_axes(pad=0.0)[source]
allensdk.brain_observatory.observatory_plots.finalize_no_labels(pad=0.3, legend=False)[source]
allensdk.brain_observatory.observatory_plots.finalize_with_axes(pad=0.3)[source]
allensdk.brain_observatory.observatory_plots.float_label(n)[source]
allensdk.brain_observatory.observatory_plots.plot_cell_correlation(sig_corrs, labels, colors, scale=15)[source]
allensdk.brain_observatory.observatory_plots.plot_combined_speed(binned_resp_vis, binned_dx_vis, binned_resp_sp, binned_dx_sp, evoked_color, spont_color)[source]
allensdk.brain_observatory.observatory_plots.plot_condition_histogram(vals, bins, color='#ccccdd')[source]
allensdk.brain_observatory.observatory_plots.plot_mask_outline(mask, ax, color='k')[source]
allensdk.brain_observatory.observatory_plots.plot_pupil_location(xy_deg, s=1, c=None, cmap=<matplotlib.colors.LinearSegmentedColormap object at 0x7f3f494fe810>, edgecolor='', include_labels=True)[source]
allensdk.brain_observatory.observatory_plots.plot_radial_histogram(angles, counts, all_angles=None, include_labels=False, offset=180.0, direction=-1, closed=False, color='#ccccdd')[source]
allensdk.brain_observatory.observatory_plots.plot_receptive_field(rf, color_map=None, clim=None, mask=None, outline_color='#cccccc', scalebar=True)[source]
allensdk.brain_observatory.observatory_plots.plot_representational_similarity(rs, dims=None, dim_labels=None, colors=None, dim_order=None, labels=True)[source]
allensdk.brain_observatory.observatory_plots.plot_selectivity_cumulative_histogram(sis, xlabel, si_range=[0, 1.5], n_hist_bins=50, color='#ccccdd')[source]
allensdk.brain_observatory.observatory_plots.plot_speed(binned_resp, binned_dx, num_bins, color)[source]
allensdk.brain_observatory.observatory_plots.plot_time_to_peak(msrs, ttps, t_start, t_end, stim_start, stim_end, cmap)[source]
allensdk.brain_observatory.observatory_plots.population_correlation_scatter(sig_corrs, noise_corrs, labels, colors, scale=15)[source]