allensdk.brain_observatory.receptive_field_analysis package

Submodules

• allensdk.brain_observatory.receptive_field_analysis.chisquarerf module
  • NLL_to_pvalue()
  • build_trial_matrix()
  • chi_square_binary()
  • chi_square_within_mask()
  • deinterpolate_RF()
  • get_disc_masks()
  • get_events_per_pixel()
  • get_expected_events_by_pixel()
  • get_peak_significance()
  • interpolate_RF()
  • locate_median()
  • pvalue_to_NLL()
  • smooth_STA()
• allensdk.brain_observatory.receptive_field_analysis.eventdetection module
  • detect_events()
• allensdk.brain_observatory.receptive_field_analysis.fit_parameters module
  • add_to_fit_parameters_dict_single()
  • compute_distance()
  • compute_overlap()
  • get_gaussian_fit_single_channel()
• allensdk.brain_observatory.receptive_field_analysis.fitgaussian2D module
  • GaussianFitError
  • fitgaussian2D()
  • gaussian2D()
  • moments2()
• allensdk.brain_observatory.receptive_field_analysis.postprocessing module
  • get_gaussian_fit()
  • run_postprocessing()
• allensdk.brain_observatory.receptive_field_analysis.receptive_field module
  • compute_receptive_field()
  • compute_receptive_field_with_postprocessing()
  • events_to_pvalues_no_fdr_correction()
  • get_attribute_dict()
  • print_summary()
  • read_h5_group()
  • read_receptive_field_from_h5()
  • write_receptive_field_to_h5()
• allensdk.brain_observatory.receptive_field_analysis.tools module
  • dict_generator()
  • list_of_dicts_to_dict_of_lists()
  • read_h5_group()
• allensdk.brain_observatory.receptive_field_analysis.utilities module
  • convolve()
  • get_A()
  • get_A_blur()
  • get_attribute_dict()
  • get_components()
  • get_shuffle_matrix()
  • get_sparse_noise_epoch_mask_list()
  • smooth()
  • upsample_image_to_degrees()
• allensdk.brain_observatory.receptive_field_analysis.visualization module
  • plot_chi_square_summary()
  • plot_ellipses()
  • plot_fields()
  • plot_gaussian_fit()
  • plot_mask()
  • plot_msr_summary()
  • plot_p_values()
  • plot_receptive_field_data()
  • plot_rts_blur_summary()
  • plot_rts_summary()
  • pvalue_to_NLL()

Module contents