allensdk.api.queries package

Submodules

• allensdk.api.queries.annotated_section_data_sets_api module
  • AnnotatedSectionDataSetsApi
    • AnnotatedSectionDataSetsApi.get_annotated_section_data_sets()
    • AnnotatedSectionDataSetsApi.get_annotated_section_data_sets_via_rma()
    • AnnotatedSectionDataSetsApi.get_compound_annotated_section_data_sets()
• allensdk.api.queries.biophysical_api module
  • BiophysicalApi
    • BiophysicalApi.BIOPHYSICAL_MODEL_TYPE_IDS
    • BiophysicalApi.build_rma()
    • BiophysicalApi.cache_data()
    • BiophysicalApi.create_manifest()
    • BiophysicalApi.get_neuronal_models()
    • BiophysicalApi.get_well_known_file_ids()
    • BiophysicalApi.is_well_known_file_type()
    • BiophysicalApi.read_json()
    • BiophysicalApi.rma_templates
• allensdk.api.queries.brain_observatory_api module
• allensdk.api.queries.cell_types_api module
  • CellTypesApi
    • CellTypesApi.HUMAN
    • CellTypesApi.MARKER_FILE_TYPE
    • CellTypesApi.MOUSE
    • CellTypesApi.NWB_FILE_TYPE
    • CellTypesApi.SWC_FILE_TYPE
    • CellTypesApi.filter_cells()
    • CellTypesApi.filter_cells_api()
    • CellTypesApi.get_cell()
    • CellTypesApi.get_ephys_features()
    • CellTypesApi.get_ephys_sweeps()
    • CellTypesApi.get_morphology_features()
    • CellTypesApi.list_cells()
    • CellTypesApi.list_cells_api()
    • CellTypesApi.save_ephys_data()
    • CellTypesApi.save_reconstruction()
    • CellTypesApi.save_reconstruction_markers()
    • CellTypesApi.simplify_cells_api()
• allensdk.api.queries.connected_services module
  • ConnectedServices
    • ConnectedServices.ARRAY
    • ConnectedServices.BOOLEAN
    • ConnectedServices.FLOAT
    • ConnectedServices.INTEGER
    • ConnectedServices.STRING
    • ConnectedServices.build_url()
    • ConnectedServices.schema
• allensdk.api.queries.glif_api module
  • GlifApi
    • GlifApi.GLIF_TYPES
    • GlifApi.NWB_FILE_TYPE
    • GlifApi.cache_stimulus_file()
    • GlifApi.get_ephys_sweeps()
    • GlifApi.get_neuron_config()
    • GlifApi.get_neuron_configs()
    • GlifApi.get_neuronal_model()
    • GlifApi.get_neuronal_model_templates()
    • GlifApi.get_neuronal_models()
    • GlifApi.get_neuronal_models_by_id()
    • GlifApi.list_neuronal_models()
    • GlifApi.rma_templates
• allensdk.api.queries.grid_data_api module
  • GridDataApi
    • GridDataApi.DATA_MASK
    • GridDataApi.DENSITY
    • GridDataApi.ENERGY
    • GridDataApi.INJECTION_DENSITY
    • GridDataApi.INJECTION_ENERGY
    • GridDataApi.INJECTION_FRACTION
    • GridDataApi.INTENSITY
    • GridDataApi.PROJECTION_DENSITY
    • GridDataApi.PROJECTION_ENERGY
    • GridDataApi.download_alignment3d()
    • GridDataApi.download_deformation_field()
    • GridDataApi.download_expression_grid_data()
    • GridDataApi.download_gene_expression_grid_data()
    • GridDataApi.download_projection_grid_data()
• allensdk.api.queries.image_download_api module
  • ImageDownloadApi
    • ImageDownloadApi.COLORMAPS
    • ImageDownloadApi.atlas_image_query()
    • ImageDownloadApi.download_atlas_image()
    • ImageDownloadApi.download_image()
    • ImageDownloadApi.download_projection_image()
    • ImageDownloadApi.download_section_image()
    • ImageDownloadApi.get_section_data_sets_by_product()
    • ImageDownloadApi.get_section_image_ranges()
    • ImageDownloadApi.rma_templates
    • ImageDownloadApi.section_image_query()
• allensdk.api.queries.mouse_atlas_api module
  • MouseAtlasApi
    • MouseAtlasApi.DEVMOUSE_ATLAS_PRODUCTS
    • MouseAtlasApi.HUMAN_ORGANISM
    • MouseAtlasApi.MOUSE_ATLAS_PRODUCTS
    • MouseAtlasApi.MOUSE_ORGANISM
    • MouseAtlasApi.download_expression_density()
    • MouseAtlasApi.download_expression_energy()
    • MouseAtlasApi.download_expression_intensity()
    • MouseAtlasApi.get_genes()
    • MouseAtlasApi.get_section_data_sets()
• allensdk.api.queries.mouse_connectivity_api module
  • MouseConnectivityApi
    • MouseConnectivityApi.PRODUCT_IDS
    • MouseConnectivityApi.build_reference_aligned_image_channel_volumes_url()
    • MouseConnectivityApi.calculate_injection_centroid()
    • MouseConnectivityApi.download_data_mask()
    • MouseConnectivityApi.download_injection_density()
    • MouseConnectivityApi.download_injection_fraction()
    • MouseConnectivityApi.download_projection_density()
    • MouseConnectivityApi.download_reference_aligned_image_channel_volumes()
    • MouseConnectivityApi.experiment_correlation_search()
    • MouseConnectivityApi.experiment_injection_coordinate_search()
    • MouseConnectivityApi.experiment_source_search()
    • MouseConnectivityApi.experiment_spatial_search()
    • MouseConnectivityApi.get_experiment_detail()
    • MouseConnectivityApi.get_experiments()
    • MouseConnectivityApi.get_experiments_api()
    • MouseConnectivityApi.get_manual_injection_summary()
    • MouseConnectivityApi.get_projection_image_info()
    • MouseConnectivityApi.get_reference_aligned_image_channel_volumes_url()
    • MouseConnectivityApi.get_structure_unionizes()
• allensdk.api.queries.ontologies_api module
  • OntologiesApi
    • OntologiesApi.get_atlases()
    • OntologiesApi.get_atlases_table()
    • OntologiesApi.get_structure_graphs()
    • OntologiesApi.get_structure_sets()
    • OntologiesApi.get_structures()
    • OntologiesApi.get_structures_with_sets()
    • OntologiesApi.rma_templates
    • OntologiesApi.unpack_structure_set_ancestors()
• allensdk.api.queries.reference_space_api module
  • ReferenceSpaceApi
    • ReferenceSpaceApi.ARA_NISSL
    • ReferenceSpaceApi.AVERAGE_TEMPLATE
    • ReferenceSpaceApi.CCF_2015
    • ReferenceSpaceApi.CCF_2016
    • ReferenceSpaceApi.CCF_2017
    • ReferenceSpaceApi.CCF_VERSION_DEFAULT
    • ReferenceSpaceApi.DEVMOUSE_2012
    • ReferenceSpaceApi.MOUSE_2011
    • ReferenceSpaceApi.VOXEL_RESOLUTION_100_MICRONS
    • ReferenceSpaceApi.VOXEL_RESOLUTION_10_MICRONS
    • ReferenceSpaceApi.VOXEL_RESOLUTION_25_MICRONS
    • ReferenceSpaceApi.VOXEL_RESOLUTION_50_MICRONS
    • ReferenceSpaceApi.build_volumetric_data_download_url()
    • ReferenceSpaceApi.download_annotation_volume()
    • ReferenceSpaceApi.download_mouse_atlas_volume()
    • ReferenceSpaceApi.download_structure_mask()
    • ReferenceSpaceApi.download_structure_mesh()
    • ReferenceSpaceApi.download_template_volume()
    • ReferenceSpaceApi.download_volumetric_data()
• allensdk.api.queries.rma_api module
  • RmaApi
    • RmaApi.ALL
    • RmaApi.COUNT
    • RmaApi.CRITERIA
    • RmaApi.DEBUG
    • RmaApi.EQ
    • RmaApi.EXCEPT
    • RmaApi.EXCPT
    • RmaApi.FALSE
    • RmaApi.INCLUDE
    • RmaApi.IS
    • RmaApi.MODEL
    • RmaApi.NUM_ROWS
    • RmaApi.ONLY
    • RmaApi.OPTIONS
    • RmaApi.ORDER
    • RmaApi.PIPE
    • RmaApi.PREVIEW
    • RmaApi.SERVICE
    • RmaApi.START_ROW
    • RmaApi.TABULAR
    • RmaApi.TRUE
    • RmaApi.build_query_url()
    • RmaApi.build_schema_query()
    • RmaApi.debug_clause()
    • RmaApi.filter()
    • RmaApi.filters()
    • RmaApi.get_schema()
    • RmaApi.model_query()
    • RmaApi.model_stage()
    • RmaApi.only_except_tabular_clause()
    • RmaApi.options_clause()
    • RmaApi.order_clause()
    • RmaApi.pipe_stage()
    • RmaApi.quote_string()
    • RmaApi.service_query()
    • RmaApi.service_stage()
    • RmaApi.tuple_filters()
• allensdk.api.queries.rma_pager module
  • RmaPager
    • RmaPager.pager()
  • pageable()
• allensdk.api.queries.rma_template module
  • RmaTemplate
    • RmaTemplate.template_query()
    • RmaTemplate.to_filter_rhs()
• allensdk.api.queries.svg_api module
  • SvgApi
    • SvgApi.build_query()
    • SvgApi.download_svg()
    • SvgApi.get_svg()
• allensdk.api.queries.synchronization_api module
  • SynchronizationApi
    • SynchronizationApi.get_image_to_atlas()
    • SynchronizationApi.get_image_to_image()
    • SynchronizationApi.get_image_to_image_2d()
    • SynchronizationApi.get_image_to_reference()
    • SynchronizationApi.get_reference_to_image()
    • SynchronizationApi.get_structure_to_image()
• allensdk.api.queries.tree_search_api module
  • TreeSearchApi
    • TreeSearchApi.get_tree()

Module contents