allensdk.api.queries.mouse_atlas_api module¶
- class allensdk.api.queries.mouse_atlas_api.MouseAtlasApi(base_uri=None)[source]¶
Bases:
ReferenceSpaceApi
,GridDataApi
Downloads Mouse Brain Atlas grid data, reference volumes, and metadata.
- DEVMOUSE_ATLAS_PRODUCTS = (3,)¶
- HUMAN_ORGANISM = (1,)¶
- MOUSE_ATLAS_PRODUCTS = (1,)¶
- MOUSE_ORGANISM = (2,)¶
- get_genes(organism_ids=None, chromosome_ids=None, **kwargs)[source]¶
Download a list of genes
- Parameters:
- organism_idslist of int, optional
Filter genes to those appearing in these organisms. Defaults to mouse (2).
- chromosome_idslist of int, optional
Filter genes to those appearing on these chromosomes. Defaults to all.
- Returns:
- list of dict:
Each element is a gene record, with a nested chromosome record (also a dict).
- get_section_data_sets(gene_ids=None, product_ids=None, **kwargs)[source]¶
Download a list of section data sets (experiments) from the Mouse Brain Atlas project.
- Parameters:
- gene_idslist of int, optional
Filter results based on the genes whose expression was characterized in each experiment. Default is all.
- product_idslist of int, optional
Filter results to a subset of products. Default is the Mouse Brain Atlas.
- Returns:
- list of dict
Each element is a section data set record, with one or more gene records nested in a list.