Source code for allensdk.mouse_connectivity.grid.subimage

import logging

from .count_subimage import CountSubImage
from .cav_subimage import CavSubImage
from .classic_subimage import ClassicSubImage


def run_subimage(input_data):
    
    # TODO: remove or fix
    logging.basicConfig(format='%(asctime)s - %(process)s - %(levelname)s - %(message)s')
    logging.getLogger('').setLevel(logging.INFO)
        
    index = input_data.pop('specimen_tissue_index')
    cls = input_data.pop('cls')
    logging.info('handling {0} at index {1}'.format(cls.__name__, index))

    si = cls(**input_data)
    
    try:
        si.setup_images()
        si.compute_coarse_planes()
    except Exception as err:
        logging.exception(err)
        raise err
    
    return index, si.accumulators