Source code for allensdk.internal.morphology.compartment

# Copyright 2016 Allen Institute for Brain Science
# This file is part of Allen SDK.
#
# Allen SDK is free software: you can redistribute it and/or modify
# it under the terms of the GNU General Public License as published by
# the Free Software Foundation, version 3 of the License.
#
# Allen SDK is distributed in the hope that it will be useful,
# but WITHOUT ANY WARRANTY; without even the implied warranty of
# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
# GNU General Public License for more details.
#
# You should have received a copy of the GNU General Public License
# along with Allen SDK.  If not, see <http://www.gnu.org/licenses/>.

import allensdk.internal.morphology.node as node

[docs]class Compartment(object): def __init__(self, node1, node2): if not isinstance(node1, node.Node) or not isinstance(node2, node.Node): raise TypeError("Must supply Node objects to Compartment constructor") self.length = node.euclidean_distance(node1, node2) self.center = node.midpoint(node1, node2) self.node1 = node1 self.node2 = node2 def __str__(self): s = "%s %f" % (str(self.center), self.length) s += "\n\t" + self.node1.short_string() + "\n\t" + self.node2.short_string() return s