allensdk.ephys package¶
Submodules¶
- allensdk.ephys.ephys_extractor module
EphysCellFeatureExtractor
EphysCellFeatureExtractor.SAG_TARGET
EphysCellFeatureExtractor.SUBTHRESH_MAX_AMP
EphysCellFeatureExtractor.as_dict()
EphysCellFeatureExtractor.cell_features()
EphysCellFeatureExtractor.long_squares_features()
EphysCellFeatureExtractor.long_squares_stim_amps()
EphysCellFeatureExtractor.process()
EphysCellFeatureExtractor.ramps_features()
EphysCellFeatureExtractor.short_squares_features()
EphysSweepFeatureExtractor
EphysSweepFeatureExtractor.as_dict()
EphysSweepFeatureExtractor.burst_metrics()
EphysSweepFeatureExtractor.delay_metrics()
EphysSweepFeatureExtractor.estimate_sag()
EphysSweepFeatureExtractor.estimate_time_constant()
EphysSweepFeatureExtractor.is_spike_feature_affected_by_clipping()
EphysSweepFeatureExtractor.pause_metrics()
EphysSweepFeatureExtractor.process_new_spike_feature()
EphysSweepFeatureExtractor.process_new_sweep_feature()
EphysSweepFeatureExtractor.process_spikes()
EphysSweepFeatureExtractor.set_stimulus_amplitude_calculator()
EphysSweepFeatureExtractor.spike_feature()
EphysSweepFeatureExtractor.spike_feature_keys()
EphysSweepFeatureExtractor.spikes()
EphysSweepFeatureExtractor.stimulus_amplitude()
EphysSweepFeatureExtractor.sweep_feature()
EphysSweepFeatureExtractor.sweep_feature_keys()
EphysSweepFeatureExtractor.voltage_deflection()
EphysSweepSetFeatureExtractor
cell_extractor_for_nwb()
extractor_for_nwb_sweeps()
fit_fi_slope()
input_resistance()
membrane_time_constant()
reset_long_squares_start()
- allensdk.ephys.ephys_features module
FeatureError
adaptation_index()
analyze_trough_details()
average_rate()
average_voltage()
calculate_dvdt()
check_thresholds_and_peaks()
detect_bursts()
detect_pauses()
detect_putative_spikes()
estimate_adjusted_detection_parameters()
filter_putative_spikes()
find_downstroke_indexes()
find_peak_indexes()
find_time_index()
find_trough_indexes()
find_upstroke_indexes()
find_widths()
fit_membrane_time_constant()
fit_prespike_time_constant()
get_isis()
has_fixed_dt()
latency()
norm_diff()
norm_sq_diff()
refine_threshold_indexes()
- allensdk.ephys.extract_cell_features module
- allensdk.ephys.feature_extractor module