allensdk.mouse_connectivity.grid.utilities.image_utilities module
allensdk.mouse_connectivity.grid.utilities.image_utilities.
block_apply
( in_image , out_shape , dtype , blocks , fn ) [source]
allensdk.mouse_connectivity.grid.utilities.image_utilities.
build_affine_transform
( aff_params ) [source]
allensdk.mouse_connectivity.grid.utilities.image_utilities.
build_composite_transform
( dfmfield=None , aff_params=None ) [source]
allensdk.mouse_connectivity.grid.utilities.image_utilities.
compute_coarse_parameters
( in_dims , in_spacing , out_spacing , reduce_level ) [source]
allensdk.mouse_connectivity.grid.utilities.image_utilities.
grid_image_blocks
( in_shape , in_spacing , out_spacing ) [source]
allensdk.mouse_connectivity.grid.utilities.image_utilities.
image_from_array
( array , spacing , origin=True ) [source]
allensdk.mouse_connectivity.grid.utilities.image_utilities.
new_image
( dims , spacing , dtype , origin=True ) [source]
allensdk.mouse_connectivity.grid.utilities.image_utilities.
np_sitk_convert
( np_type ) [source]
allensdk.mouse_connectivity.grid.utilities.image_utilities.
rasterize_polygons
( shape , scale , polys ) [source]
allensdk.mouse_connectivity.grid.utilities.image_utilities.
read_intensity_image
( )
allensdk.mouse_connectivity.grid.utilities.image_utilities.
read_segmentation_image
( path )
allensdk.mouse_connectivity.grid.utilities.image_utilities.
resample_into_volume
( image , transform , z , vol , dtype=8 ) [source]
allensdk.mouse_connectivity.grid.utilities.image_utilities.
resample_volume
( volume , dims , spacing , interpolator=None , transform=None ) [source]
allensdk.mouse_connectivity.grid.utilities.image_utilities.
set_image_spacing
( image , spacing , origin=True ) [source]
allensdk.mouse_connectivity.grid.utilities.image_utilities.
sitk_np_convert
( sitk_type ) [source]
allensdk.mouse_connectivity.grid.utilities.image_utilities.
write_volume
( volume , name , prefix=None , specify_resolution=None , extension='.nrrd' , paths=None ) [source]