allensdk.internal.api.queries.biophysical_module_reader module¶
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class
allensdk.internal.api.queries.biophysical_module_reader.
BiophysicalModuleReader
[source]¶ Bases:
object
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MOD_FILE_TYPE_ID
= 292178729¶
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MORPHOLOGY_TYPE_ID
= 303941301¶
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STIMULUS_CONTENT_TYPE
= None¶
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fit_parameters_file_entries
(self)[source]¶ read the fit_parameter file path from the lims result corresponding to the stimulus file :return: well_known_file entries :rtype: array of dicts
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fit_parameters_path
(self)[source]¶ Get the path to the fit parameters file from the lims result. :return: path to file :rtype: string
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lims_working_directory
(self)[source]¶ While this is the same directory as the neuronal_model_run directory, it can be mocked out for testing if the other directory is read only.
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mod_file_entries
(self)[source]¶ read the NERUON .mod file entries from the lims result corresponding to the NeuronModel :return: well known file entries :rtype: array of dicts
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mod_file_paths
(self)[source]¶ Get the paths to the mod files from the lims result. :return: paths to mod files :rtype: array of strings
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morphology_file_entries
(self)[source]¶ read the well known file paths from the lims result corresponding to the morphology
Returns: - arrary of dicts:
well known file entries
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morphology_path
(self)[source]¶ Get the path to the morphology file from the lims result. :return: path to morphology file :rtype: string
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neuronal_model_run_dir
(self)[source]¶ read the directory path where output goes from the lims optimization config json
Returns: - string:
directory path
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stimulus_file_entries
(self)[source]¶ read the well known file path from the lims result corresponding to the stimulus file :return: well_known_file entries :rtype: array of dicts
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stimulus_path
(self)[source]¶ Get the path to the stimulus file from the lims result. :return: path to stimulus file :rtype: string
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sweep_entries
(self)[source]¶ read the sweep entries from the lims result corresponding to the stimulus :return: stimulus sweep entries :rtype: array of dicts
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