allensdk.mouse_connectivity.grid.subimage.count_subimage module

class allensdk.mouse_connectivity.grid.subimage.count_subimage.CountSubImage(reduce_level, in_dims, in_spacing, coarse_spacing, polygon_info, segmentation_paths, injection_polygon_key='aav_tracer', *args, **kwargs)[source]

Bases: allensdk.mouse_connectivity.grid.subimage.base_subimage.SegmentationSubImage, allensdk.mouse_connectivity.grid.subimage.base_subimage.PolygonSubImage

compute_coarse_planes(self)[source]
compute_injection(self)[source]
compute_projection(self)[source]
compute_sum_pixels(self)[source]
process_segmentation(self)[source]
required_polys = ['missing_tile', 'no_signal', 'aav_exclusion']
required_segmentations = ['segmentation']