allensdk.internal.mouse_connectivity.interval_unionize.data_utilities module

allensdk.internal.mouse_connectivity.interval_unionize.data_utilities.get_cav_density(cav_density_path)[source]
allensdk.internal.mouse_connectivity.interval_unionize.data_utilities.get_injection_data(injection_fraction_path, injection_density_path, injection_energy_path)[source]

Read nrrd files containing injection signal data

allensdk.internal.mouse_connectivity.interval_unionize.data_utilities.get_projection_data(projection_density_path, projection_energy_path, aav_exclusion_fraction_path=None)[source]

Read nrrd files containing global signal data

allensdk.internal.mouse_connectivity.interval_unionize.data_utilities.get_sum_pixel_intensities(sum_pixel_intensities_path, injection_sum_pixel_intensities_path)[source]
allensdk.internal.mouse_connectivity.interval_unionize.data_utilities.get_sum_pixels(sum_pixels_path)[source]
allensdk.internal.mouse_connectivity.interval_unionize.data_utilities.load_annotation(annotation_path, data_mask_path=None)[source]

Read data files segmenting the reference space into regions of valid and invalid data, then further among brain structures

allensdk.internal.mouse_connectivity.interval_unionize.data_utilities.read(path)[source]