allensdk.internal.model.biophysical.run_optimize module

class allensdk.internal.model.biophysical.run_optimize.RunOptimize(input_json, output_json)[source]

Bases: object

copy_local(self)[source]
generate_manifest_lims(self, lims_json_path, manifest_path)[source]
generate_manifest_rma(self, neuronal_model_id, manifest_path, api_url=None)[source]
info(self, lims_json_path)[source]

return a string that a bash script can use to find the working directory, etc. to clean up.

load_manifest(self)[source]
make_fit(self)[source]
nrnivmodl(self)[source]
start_specimen(self)[source]
allensdk.internal.model.biophysical.run_optimize.main(command, input_json, output_json)[source]

Entry point for module. :param command: select behavior, nrnivmodl or simulate :type command: string :param lims_strategy_json: path to json file output from lims. :type lims_strategy_json: string :param lims_response_json: path to json file returned to lims. :type lims_response_json: string