allensdk.internal.ephys.plot_qc_figures3 module

allensdk.internal.ephys.plot_qc_figures3.exp_curve(x, a, inv_tau, y0)[source]

Function used for tau curve fitting

allensdk.internal.ephys.plot_qc_figures3.get_features(sweep_features, sweep_number)[source]
allensdk.internal.ephys.plot_qc_figures3.get_spikes(sweep_features, sweep_number)[source]
allensdk.internal.ephys.plot_qc_figures3.get_time_string()[source]
allensdk.internal.ephys.plot_qc_figures3.load_experiment(file_name, sweep_number)[source]
allensdk.internal.ephys.plot_qc_figures3.make_cell_html(image_files, file_name, relative_sweep_link, specimen_info, fields)[source]
allensdk.internal.ephys.plot_qc_figures3.make_cell_page(nwb_file, cell_features, rheo_features, sweep_features, sweep_info, well_known_files, specimen_info, working_dir, fields_to_show, save_cell_plots=True)[source]

nwb_file: name of nwb file (string)

cell_features:

rheo_features: dict containing extracted features from rheobase sweep

sweep_features:

sweep_info:

well_known_files: LIMS-output information containing graphics file names

working_dir:

save_cell_plots:

allensdk.internal.ephys.plot_qc_figures3.make_sweep_html(sweep_files, file_name)[source]
allensdk.internal.ephys.plot_qc_figures3.make_sweep_page(nwb_file, working_dir, sweep_data)[source]
allensdk.internal.ephys.plot_qc_figures3.mask_nulls(data)[source]
allensdk.internal.ephys.plot_qc_figures3.plot_cell_figures(nwb_file, cell_features, sweep_features, rheo_features, image_dir, sweep_info, sizes)[source]
allensdk.internal.ephys.plot_qc_figures3.plot_fi_curve_figures(nwb_file, cell_features, rheo_features, sweep_features, image_dir, sizes, cell_image_files)[source]
allensdk.internal.ephys.plot_qc_figures3.plot_hero_figures(nwb_file, cell_features, rheo_features, sweep_features, image_dir, sizes, cell_image_files)[source]
allensdk.internal.ephys.plot_qc_figures3.plot_images(well_known_files, image_dir, sizes, image_sets)[source]
allensdk.internal.ephys.plot_qc_figures3.plot_instantaneous_threshold_thumbnail(nwb_file, sweep_numbers, cell_features, rheo_features, sweep_features, color='red')[source]
allensdk.internal.ephys.plot_qc_figures3.plot_long_square_summary(nwb_file, cell_features, rheo_features, sweep_features)[source]
allensdk.internal.ephys.plot_qc_figures3.plot_ramp_figures(nwb_file, sweep_info, cell_features, rheo_features, sweep_features, image_dir, sizes, cell_image_files)[source]
allensdk.internal.ephys.plot_qc_figures3.plot_rheo_figures(nwb_file, cell_features, rheo_features, sweep_features, image_dir, sizes, cell_image_files)[source]
allensdk.internal.ephys.plot_qc_figures3.plot_sag_figures(nwb_file, cell_features, rheo_features, sweep_features, image_dir, sizes, cell_image_files)[source]
allensdk.internal.ephys.plot_qc_figures3.plot_short_square_figures(nwb_file, cell_features, rheo_features, sweep_features, image_dir, sizes, cell_image_files)[source]
allensdk.internal.ephys.plot_qc_figures3.plot_single_ap_values(nwb_file, sweep_numbers, rheo_features, sweep_features, cell_features, type_name)[source]
allensdk.internal.ephys.plot_qc_figures3.plot_subthreshold_long_square_figures(nwb_file, cell_features, rheo_features, sweep_features, image_dir, sizes, cell_image_files)[source]
allensdk.internal.ephys.plot_qc_figures3.plot_sweep_figures(nwb_file, sweep_data, image_dir, sizes)[source]
allensdk.internal.ephys.plot_qc_figures3.plot_sweep_set_summary(nwb_file, highlight_sweep_number, sweep_numbers, highlight_color='#0779BE', background_color='#dddddd')[source]
allensdk.internal.ephys.plot_qc_figures3.plot_sweep_value_figures(sweep_info, image_dir, sizes, cell_image_files)[source]
allensdk.internal.ephys.plot_qc_figures3.save_figure(fig, image_name, image_set_name, image_dir, sizes, image_sets, scalew=1, scaleh=1, ext='jpg')[source]