allensdk.internal.ephys.plot_qc_figures module

allensdk.internal.ephys.plot_qc_figures.exp_curve(x, a, inv_tau, y0)[source]

Function used for tau curve fitting

allensdk.internal.ephys.plot_qc_figures.get_features(sweep_features, sweep_number)[source]
allensdk.internal.ephys.plot_qc_figures.get_spikes(sweep_features, sweep_number)[source]
allensdk.internal.ephys.plot_qc_figures.get_time_string()[source]
allensdk.internal.ephys.plot_qc_figures.load_experiment(file_name, sweep_number)[source]
allensdk.internal.ephys.plot_qc_figures.main()[source]
allensdk.internal.ephys.plot_qc_figures.make_cell_html(image_files, ephys_roi_result, file_name, relative_sweep_link)[source]
allensdk.internal.ephys.plot_qc_figures.make_cell_page(nwb_file, ephys_roi_result, working_dir, save_cell_plots=True)[source]
allensdk.internal.ephys.plot_qc_figures.make_sweep_html(sweep_files, file_name)[source]
allensdk.internal.ephys.plot_qc_figures.make_sweep_page(nwb_file, ephys_roi_result, working_dir)[source]
allensdk.internal.ephys.plot_qc_figures.mask_nulls(data)[source]
allensdk.internal.ephys.plot_qc_figures.plot_cell_figures(nwb_file, ephys_roi_result, image_dir, sizes)[source]
allensdk.internal.ephys.plot_qc_figures.plot_fi_curve_figures(nwb_file, cell_features, lims_features, sweep_features, image_dir, sizes, cell_image_files)[source]
allensdk.internal.ephys.plot_qc_figures.plot_hero_figures(nwb_file, cell_features, lims_features, sweep_features, image_dir, sizes, cell_image_files)[source]
allensdk.internal.ephys.plot_qc_figures.plot_images(ephys_roi_result, image_dir, sizes, image_sets)[source]
allensdk.internal.ephys.plot_qc_figures.plot_instantaneous_threshold_thumbnail(nwb_file, sweep_numbers, cell_features, lims_features, sweep_features, color='red')[source]
allensdk.internal.ephys.plot_qc_figures.plot_long_square_summary(nwb_file, cell_features, lims_features, sweep_features)[source]
allensdk.internal.ephys.plot_qc_figures.plot_ramp_figures(nwb_file, cell_specimen, cell_features, lims_features, sweep_features, image_dir, sizes, cell_image_files)[source]
allensdk.internal.ephys.plot_qc_figures.plot_rheo_figures(nwb_file, cell_features, lims_features, sweep_features, image_dir, sizes, cell_image_files)[source]
allensdk.internal.ephys.plot_qc_figures.plot_sag_figures(nwb_file, cell_features, lims_features, sweep_features, image_dir, sizes, cell_image_files)[source]
allensdk.internal.ephys.plot_qc_figures.plot_short_square_figures(nwb_file, cell_features, lims_features, sweep_features, image_dir, sizes, cell_image_files)[source]
allensdk.internal.ephys.plot_qc_figures.plot_single_ap_values(nwb_file, sweep_numbers, lims_features, sweep_features, cell_features, type_name)[source]
allensdk.internal.ephys.plot_qc_figures.plot_subthreshold_long_square_figures(nwb_file, cell_features, lims_features, sweep_features, image_dir, sizes, cell_image_files)[source]
allensdk.internal.ephys.plot_qc_figures.plot_sweep_figures(nwb_file, ephys_roi_result, image_dir, sizes)[source]
allensdk.internal.ephys.plot_qc_figures.plot_sweep_set_summary(nwb_file, highlight_sweep_number, sweep_numbers, highlight_color='#0779BE', background_color='#dddddd')[source]
allensdk.internal.ephys.plot_qc_figures.plot_sweep_value_figures(cell_specimen, image_dir, sizes, cell_image_files)[source]
allensdk.internal.ephys.plot_qc_figures.save_figure(fig, image_name, image_set_name, image_dir, sizes, image_sets, scalew=1, scaleh=1, ext='jpg')[source]