allensdk.brain_observatory.behavior.behavior_ophys_api.behavior_ophys_nwb_api module

class allensdk.brain_observatory.behavior.behavior_ophys_api.behavior_ophys_nwb_api.BehaviorOphysNwbApi(*args, **kwargs)[source]

Bases: allensdk.brain_observatory.nwb.nwb_api.NwbApi, allensdk.brain_observatory.behavior.behavior_ophys_api.BehaviorOphysApiBase

get_average_projection(self, image_api=None) → SimpleITK.SimpleITK.Image[source]
get_cell_specimen_table(self) → pandas.core.frame.DataFrame[source]
get_corrected_fluorescence_traces(self) → pandas.core.frame.DataFrame[source]
get_dff_traces(self) → pandas.core.frame.DataFrame[source]
get_licks(self) → numpy.ndarray[source]
get_max_projection(self, image_api=None) → SimpleITK.SimpleITK.Image[source]
get_metadata(self) → dict[source]
get_motion_correction(self) → pandas.core.frame.DataFrame[source]
get_ophys_timestamps(self) → numpy.ndarray[source]
get_rewards(self) → numpy.ndarray[source]
get_running_data_df(self, **kwargs)[source]
get_segmentation_mask_image(self, image_api=None) → SimpleITK.SimpleITK.Image[source]
get_stimulus_templates(self, **kwargs)[source]
get_stimulus_timestamps(self) → numpy.ndarray[source]
get_task_parameters(self) → dict[source]
get_trials(self) → pandas.core.frame.DataFrame[source]
save(self, session_object)[source]
allensdk.brain_observatory.behavior.behavior_ophys_api.behavior_ophys_nwb_api.compare_fields(x1, x2, err_msg='')[source]
allensdk.brain_observatory.behavior.behavior_ophys_api.behavior_ophys_nwb_api.equals(A, B, reraise=False)[source]