allensdk.internal.ephys.plot_qc_figures3 module¶
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allensdk.internal.ephys.plot_qc_figures3.
exp_curve
(x, a, inv_tau, y0)[source]¶ Function used for tau curve fitting
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allensdk.internal.ephys.plot_qc_figures3.
make_cell_html
(image_files, file_name, relative_sweep_link, specimen_info, fields)[source]¶
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allensdk.internal.ephys.plot_qc_figures3.
make_cell_page
(nwb_file, cell_features, rheo_features, sweep_features, sweep_info, well_known_files, specimen_info, working_dir, fields_to_show, save_cell_plots=True)[source]¶ nwb_file: name of nwb file (string)
cell_features:
rheo_features: dict containing extracted features from rheobase sweep
sweep_features:
sweep_info:
well_known_files: LIMS-output information containing graphics file names
working_dir:
save_cell_plots:
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allensdk.internal.ephys.plot_qc_figures3.
make_sweep_page
(nwb_file, working_dir, sweep_data)[source]¶
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allensdk.internal.ephys.plot_qc_figures3.
plot_cell_figures
(nwb_file, cell_features, sweep_features, rheo_features, image_dir, sweep_info, sizes)[source]¶
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allensdk.internal.ephys.plot_qc_figures3.
plot_fi_curve_figures
(nwb_file, cell_features, rheo_features, sweep_features, image_dir, sizes, cell_image_files)[source]¶
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allensdk.internal.ephys.plot_qc_figures3.
plot_hero_figures
(nwb_file, cell_features, rheo_features, sweep_features, image_dir, sizes, cell_image_files)[source]¶
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allensdk.internal.ephys.plot_qc_figures3.
plot_images
(well_known_files, image_dir, sizes, image_sets)[source]¶
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allensdk.internal.ephys.plot_qc_figures3.
plot_instantaneous_threshold_thumbnail
(nwb_file, sweep_numbers, cell_features, rheo_features, sweep_features, color='red')[source]¶
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allensdk.internal.ephys.plot_qc_figures3.
plot_long_square_summary
(nwb_file, cell_features, rheo_features, sweep_features)[source]¶
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allensdk.internal.ephys.plot_qc_figures3.
plot_ramp_figures
(nwb_file, sweep_info, cell_features, rheo_features, sweep_features, image_dir, sizes, cell_image_files)[source]¶
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allensdk.internal.ephys.plot_qc_figures3.
plot_rheo_figures
(nwb_file, cell_features, rheo_features, sweep_features, image_dir, sizes, cell_image_files)[source]¶
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allensdk.internal.ephys.plot_qc_figures3.
plot_sag_figures
(nwb_file, cell_features, rheo_features, sweep_features, image_dir, sizes, cell_image_files)[source]¶
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allensdk.internal.ephys.plot_qc_figures3.
plot_short_square_figures
(nwb_file, cell_features, rheo_features, sweep_features, image_dir, sizes, cell_image_files)[source]¶
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allensdk.internal.ephys.plot_qc_figures3.
plot_single_ap_values
(nwb_file, sweep_numbers, rheo_features, sweep_features, cell_features, type_name)[source]¶
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allensdk.internal.ephys.plot_qc_figures3.
plot_subthreshold_long_square_figures
(nwb_file, cell_features, rheo_features, sweep_features, image_dir, sizes, cell_image_files)[source]¶
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allensdk.internal.ephys.plot_qc_figures3.
plot_sweep_figures
(nwb_file, sweep_data, image_dir, sizes)[source]¶
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allensdk.internal.ephys.plot_qc_figures3.
plot_sweep_set_summary
(nwb_file, highlight_sweep_number, sweep_numbers, highlight_color='#0779BE', background_color='#dddddd')[source]¶