allensdk.internal.pipeline_modules.run_roi_filter module

allensdk.internal.pipeline_modules.run_roi_filter.create_input_data(experiment_id)

allensdk.internal.pipeline_modules.run_roi_filter.create_output_data(rois, model_id, border, excluded, unexpected_features)

allensdk.internal.pipeline_modules.run_roi_filter.debug(experiment_id, local=False, sdk_path='/data/informatics/CAM/roi_filter/allensdk/', script='/data/informatics/CAM/roi_filter/allensdk/allensdk/internal/pipeline_modules/run_roi_filter.py', output_directory='/data/informatics/CAM/roi_filter/')

allensdk.internal.pipeline_modules.run_roi_filter.get_genotype_info(experiment_id, code)

allensdk.internal.pipeline_modules.run_roi_filter.get_model_info(experiment_id)

allensdk.internal.pipeline_modules.run_roi_filter.get_motion_filepath(experiment_id)

allensdk.internal.pipeline_modules.run_roi_filter.get_segmentation_filepath(experiment_id, file_type)

allensdk.internal.pipeline_modules.run_roi_filter.is_deprecated_motion_file(filename)

Check if a file is an old style motion correction file.

By agreement, new-style files will always have a header and that header will always contain at least 1 alpha character.

allensdk.internal.pipeline_modules.run_roi_filter.load_all_input(data)

Load all input data from the input json.

allensdk.internal.pipeline_modules.run_roi_filter.load_object_list(filename)

Load the object list file.

allensdk.internal.pipeline_modules.run_roi_filter.load_rigid_motion_transform(filename)

Load the rigid motion transform file.

allensdk.internal.pipeline_modules.run_roi_filter.main()