allensdk.internal.pipeline_modules.run_roi_filter module¶
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allensdk.internal.pipeline_modules.run_roi_filter.
create_output_data
(rois, model_id, border, excluded, unexpected_features)[source]¶
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allensdk.internal.pipeline_modules.run_roi_filter.
debug
(experiment_id, local=False, sdk_path='/data/informatics/CAM/roi_filter/allensdk/', script='/data/informatics/CAM/roi_filter/allensdk/allensdk/internal/pipeline_modules/run_roi_filter.py', output_directory='/data/informatics/CAM/roi_filter/')[source]¶
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allensdk.internal.pipeline_modules.run_roi_filter.
get_segmentation_filepath
(experiment_id, file_type)[source]¶
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allensdk.internal.pipeline_modules.run_roi_filter.
is_deprecated_motion_file
(filename)[source]¶ Check if a file is an old style motion correction file.
By agreement, new-style files will always have a header and that header will always contain at least 1 alpha character.
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allensdk.internal.pipeline_modules.run_roi_filter.
load_all_input
(data)[source]¶ Load all input data from the input json.
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allensdk.internal.pipeline_modules.run_roi_filter.
load_object_list
(filename)[source]¶ Load the object list file.