allensdk.internal.pipeline_modules.gbm.generate_gbm_heatmap module¶
-
allensdk.internal.pipeline_modules.gbm.generate_gbm_heatmap.
create_gene_fpkm_table
(analysis_run_records)[source]¶ Creates a a matrix (“rows x columns = genes x samples”) of fpkm gene expression values for each particular (gene, sample) pair. Rows are sorted by entrez_id and columns are by rna_well_id
-
allensdk.internal.pipeline_modules.gbm.generate_gbm_heatmap.
create_genes_for_transcripts
(analysis_run_transcript_file)[source]¶ Creates a list that contains the associated gene for each transcript sorted alphabetically
-
allensdk.internal.pipeline_modules.gbm.generate_gbm_heatmap.
create_sample_metadata
(sample_metadata_records)[source]¶ Creates a table of sample metadata sorted by rna_well_id
-
allensdk.internal.pipeline_modules.gbm.generate_gbm_heatmap.
create_transcript_fpkm_table
(analysis_run_records)[source]¶ Creates a a matrix (“rows x columns = transcripts x samples”) of fpkm gene expression values for each particular (transcript, sample) pair. Rows are sorted by transcript id and columns are by rna_well_id