allensdk.mouse_connectivity.grid.subimage.classic_subimage module

class allensdk.mouse_connectivity.grid.subimage.classic_subimage.ClassicSubImage(reduce_level, in_dims, in_spacing, coarse_spacing, polygon_info, segmentation_paths, intensity_paths, injection_polygon_key='aav_tracer', *args, **kwargs)

Bases: allensdk.mouse_connectivity.grid.subimage.base_subimage.IntensitySubImage, allensdk.mouse_connectivity.grid.subimage.base_subimage.SegmentationSubImage, allensdk.mouse_connectivity.grid.subimage.base_subimage.PolygonSubImage

compute_coarse_planes(self)

compute_injection(self)

compute_intensity(self)

compute_projection(self)

compute_sum_pixels(self)

optional_polys = ['aav_tracer']

process_segmentation(self)

required_intensities = ['green']

required_polys = ['missing_tile', 'no_signal', 'aav_exclusion']

required_segmentations = ['segmentation']